PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123493.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 308aa    MW: 33318.6 Da    PI: 6.6931
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.9e-16229265135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_027123493.1 229 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 265
                     *****99999************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MEGGGGIHGG QAGTMHQQVH YLEEEDHHHH HHHVLHHMGN GHIMNHHGDE HEDTGSGAVV  60
GGSECMDADV STDQATLSDN HSALVPPGAS GSITNDNNQL TLSFQGQVYV FDSVSPEKVQ  120
AVLLLLGGRE VPLNVPTNPG ISSTPEKFNV PQRLASLIRF REKRKERNFD KKIRYTVRKE  180
VALRMQRNKG QFTSSKPSND DAASAASSWD SNQNWGLDAS ASQNQEISCR HCGISEKSTP  240
MMRRGPEGPR TLCNACGLMW ANKGTLRDLS KGGGVQGPNC SLNQSDENGN FKADETVIRV  300
AGNGSDSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-95GATA family protein