PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123490.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 315aa    MW: 34070.4 Da    PI: 6.8265
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16236272135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_027123490.1 236 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 272
                     *****99999************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MEGGGGIHGG QAGTMHQQVH YLEEEDHHHH HHHVLHHMGN GHIMNHHGDE HEDTGSGAVV  60
GGSECMDADV STDQATLSDN HSALVPPGAS GSITNDNNQL TLSFQGQVYV FDSVSPEKVQ  120
AVLLLLGGRE VPLNVPTNPV STHGNRGISS TPEKFNVPQR LASLIRFREK RKERNFDKKI  180
RYTVRKEVAL RMQRNKGQFT SSKPSNDDAA SAASSWDSNQ NWGLDASASQ NQEISCRHCG  240
ISEKSTPMMR RGPEGPRTLC NACGLMWANK GTLRDLSKGG GVQGPNCSLN QSDENGNFKA  300
DETVIRVAGN GSDSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-97GATA family protein