PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123355.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 322aa MW: 36152.5 Da PI: 9.3498

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1e-05	58	80	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C + r G+C yG+ C F+H+ XP_027123355.1 58 SESCLQYKR-GHCDYGADCIFSHD 80 567888888.*************7 PP
2	zf-CCCH	30.5	6.4e-10	93	114	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lCrff+ + C+yG+rC+F H XP_027123355.1 93 RLCRFFMNGKNCPYGNRCHFLH 114 79****99********** PP
3	zf-CCCH	43.7	4.6e-14	160	186	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+++ r+G C+yG rC++aHg+ XP_027123355.1 160 WKTRPCNNWDRNGSCPYGVRCQYAHGE 186 8************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MPAGSYKCVT DSITNYCGAD FQSCKKPGFS NSMMNSSSRM STSSTSRSNL ARPINAKSES 60 CLQYKRGHCD YGADCIFSHD MPEDQYRLMN RARLCRFFMN GKNCPYGNRC HFLHQNVKHV 120 KGGSGVAREK AAVTVVKSGP EEGVRKESDR LACKRKAVLW KTRPCNNWDR NGSCPYGVRC 180 QYAHGERELG KPSSFCPLES GKSFIVENLA FDREDAASTG KAIRTDCTQQ EKSKSKSFFV 240 KRDKVKKISG IYADWIEITL PQNLQIVFVR ALQLVDFKAV ILATKNSLLR ELAGIICLPR 300 AVVQEFFQMW MTGSCLLEHA DP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-22	C3H family protein