PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123151.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 455aa MW: 49309.5 Da PI: 7.3469

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	58.2	1.5e-18	154	203	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lre++P++ ++K +Ka+ L +++eYI+ Lq XP_027123151.1 154 RSKHSATEQRRRSKINDRFQKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 203 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MMAQASSTNI NDENSNCSSY AGGGFTLWDE SAVKKGKTGK ENNAGDRAVL KEAEANVGAG 60 QWRASAERPS QSSSNHKLNA ATFSSLSTSK PSLAQRNQSF VNMITSAKSF QEEDDDDDDE 120 EEFVIKKEPS SHPKGNLSVK VDGKSTDQKP STPRSKHSAT EQRRRSKIND RFQKLREIIP 180 HSDQKRDKAS FLLEVIEYIQ FLQDKVQKYE GPYPGWNQEL SKPMPSRNLR GPEDFINSTQ 240 VTNIGSNPLI HAAKLNESKV TSSSALAING QHLESDVSSA AAFGEKDHQP DITDKAASVP 300 MALRHGIFPF GGTSTASVPL SSMPASDIDK TASHPQHQFW PRGSCTADSN ITDKLKDQEL 360 TIESGTISIS SIYSQGLLST LTQALQSSGI DLSQANISVQ IDLGKRANGR VNSSASVIKD 420 VDVPSCNQAM PRSIVTRAGE DSPGQALKRL KTSRS

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MMAQASSTNI NDENSNCSSY AGGGFTLWDE SAVKKGKTGK ENNAGDRAVL KEAEANVGAG  60
QWRASAERPS QSSSNHKLNA ATFSSLSTSK PSLAQRNQSF VNMITSAKSF QEEDDDDDDE  120
EEFVIKKEPS SHPKGNLSVK VDGKSTDQKP STPRSKHSAT EQRRRSKIND RFQKLREIIP  180
HSDQKRDKAS FLLEVIEYIQ FLQDKVQKYE GPYPGWNQEL SKPMPSRNLR GPEDFINSTQ  240
VTNIGSNPLI HAAKLNESKV TSSSALAING QHLESDVSSA AAFGEKDHQP DITDKAASVP  300
MALRHGIFPF GGTSTASVPL SSMPASDIDK TASHPQHQFW PRGSCTADSN ITDKLKDQEL  360
TIESGTISIS SIYSQGLLST LTQALQSSGI DLSQANISVQ IDLGKRANGR VNSSASVIKD  420
VDVPSCNQAM PRSIVTRAGE DSPGQALKRL KTSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	9e-61	bHLH family protein