PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123005.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 525aa MW: 57417.4 Da PI: 5.2879

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	214	237	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF+H+p XP_027123005.1 214 EDCAYYMKTGSCKFGMNCKFNHPP 237 79********************97 PP
2	zf-CCCH	28.9	1.9e-09	260	284	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ +G Ck+G+ Ck++H++ XP_027123005.1 260 QTECKYYLTSGGCKFGSACKYNHSR 284 568********************95 PP
3	zf-CCCH	42.3	1.3e-13	305	329	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++CkF+H+ XP_027123005.1 305 GEKECPYYMRTGSCKYGSNCKFNHP 329 7899********************9 PP
4	zf-CCCH	30.1	8.2e-10	430	456	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Cky ++C+F+H++ XP_027123005.1 430 PGQPDCSYFLKTGDCKYKANCRFNHPK 456 5789*********************96 PP
5	zf-CCCH	36.5	8.2e-12	477	502	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+ r+G+Ck+G+ CkF H++ XP_027123005.1 477 DQSICSFYNRYGICKFGPACKFDHPE 502 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MGGGASTTME SKPSEEKQHF QCSEHQNPQN GVAPQNPQSA ERGLVKPQSS EPETTPVSSS 60 DHHLTVIGAE LKPQMLPVES KGGSGAGDEI DGQNGLDEDG ILRKTLDEEI HQVIYKEALN 120 EAVMNLALGE DRNGEVEVGL GMGTNGEEFW EGGSDVLRGR GVDVDELFQG RYGNDEVGGE 180 VEGEENYGTE EASGYSGDRT YNRRFEYPLR LDAEDCAYYM KTGSCKFGMN CKFNHPPKRR 240 NQGTRDKAKP RVEDSERLGQ TECKYYLTSG GCKFGSACKY NHSREKSALA PVVEFNFLGL 300 PIRPGEKECP YYMRTGSCKY GSNCKFNHPD PTSVAGNDHA SGFVAGGSAQ LHGAAQTSAS 360 SWSSASMIFP PAQGMPSNAE WNGYQATVYP TSERSLPTPP AFAMNNPVSE TNFYAPLQQQ 420 MPVDEYPQRP GQPDCSYFLK TGDCKYKANC RFNHPKFQSS KSTSCALSDK GLPLRPDQSI 480 CSFYNRYGIC KFGPACKFDH PENWGKSVAS GGVRMARNEM EAGFS

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MGGGASTTME SKPSEEKQHF QCSEHQNPQN GVAPQNPQSA ERGLVKPQSS EPETTPVSSS  60
DHHLTVIGAE LKPQMLPVES KGGSGAGDEI DGQNGLDEDG ILRKTLDEEI HQVIYKEALN  120
EAVMNLALGE DRNGEVEVGL GMGTNGEEFW EGGSDVLRGR GVDVDELFQG RYGNDEVGGE  180
VEGEENYGTE EASGYSGDRT YNRRFEYPLR LDAEDCAYYM KTGSCKFGMN CKFNHPPKRR  240
NQGTRDKAKP RVEDSERLGQ TECKYYLTSG GCKFGSACKY NHSREKSALA PVVEFNFLGL  300
PIRPGEKECP YYMRTGSCKY GSNCKFNHPD PTSVAGNDHA SGFVAGGSAQ LHGAAQTSAS  360
SWSSASMIFP PAQGMPSNAE WNGYQATVYP TSERSLPTPP AFAMNNPVSE TNFYAPLQQQ  420
MPVDEYPQRP GQPDCSYFLK TGDCKYKANC RFNHPKFQSS KSTSCALSDK GLPLRPDQSI  480
CSFYNRYGIC KFGPACKFDH PENWGKSVAS GGVRMARNEM EAGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-106	C3H family protein