PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027123004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 526aa MW: 57545.5 Da PI: 5.2879 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.4e-11 | 214 | 237 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF+H+p XP_027123004.1 214 EDCAYYMKTGSCKFGMNCKFNHPP 237 79********************97 PP | |||||||
2 | zf-CCCH | 28.9 | 2e-09 | 260 | 284 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ +G Ck+G+ Ck++H++ XP_027123004.1 260 QTECKYYLTSGGCKFGSACKYNHSR 284 568********************95 PP | |||||||
3 | zf-CCCH | 41.9 | 1.6e-13 | 306 | 330 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++CkF+H+ XP_027123004.1 306 GEKECPYYMRTGSCKYGSNCKFNHP 330 6789********************9 PP | |||||||
4 | zf-CCCH | 30.1 | 8.2e-10 | 431 | 457 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Cky ++C+F+H++ XP_027123004.1 431 PGQPDCSYFLKTGDCKYKANCRFNHPK 457 5789*********************96 PP | |||||||
5 | zf-CCCH | 36.5 | 8.3e-12 | 478 | 503 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+ r+G+Ck+G+ CkF H++ XP_027123004.1 478 DQSICSFYNRYGICKFGPACKFDHPE 503 6789********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence |
MGGGASTTME SKPSEEKQHF QCSEHQNPQN GVAPQNPQSA ERGLVKPQSS EPETTPVSSS 60 DHHLTVIGAE LKPQMLPVES KGGSGAGDEI DGQNGLDEDG ILRKTLDEEI HQVIYKEALN 120 EAVMNLALGE DRNGEVEVGL GMGTNGEEFW EGGSDVLRGR GVDVDELFQG RYGNDEVGGE 180 VEGEENYGTE EASGYSGDRT YNRRFEYPLR LDAEDCAYYM KTGSCKFGMN CKFNHPPKRR 240 NQGTRDKAKP RVEDSERLGQ TECKYYLTSG GCKFGSACKY NHSREKSALA PVVEFNFLGL 300 PIRPQGEKEC PYYMRTGSCK YGSNCKFNHP DPTSVAGNDH ASGFVAGGSA QLHGAAQTSA 360 SSWSSASMIF PPAQGMPSNA EWNGYQATVY PTSERSLPTP PAFAMNNPVS ETNFYAPLQQ 420 QMPVDEYPQR PGQPDCSYFL KTGDCKYKAN CRFNHPKFQS SKSTSCALSD KGLPLRPDQS 480 ICSFYNRYGI CKFGPACKFD HPENWGKSVA SGGVRMARNE MEAGFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-104 | C3H family protein |