PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 526aa    MW: 57545.5 Da    PI: 5.2879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-11214237427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e C ++++tG Ck+G +CkF+H+p
  XP_027123004.1 214 EDCAYYMKTGSCKFGMNCKFNHPP 237
                     79********************97 PP

2zf-CCCH28.92e-09260284327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G Ck+G+ Ck++H++
  XP_027123004.1 260 QTECKYYLTSGGCKFGSACKYNHSR 284
                     568********************95 PP

3zf-CCCH41.91.6e-13306330226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++CkF+H+
  XP_027123004.1 306 GEKECPYYMRTGSCKYGSNCKFNHP 330
                     6789********************9 PP

4zf-CCCH30.18.2e-10431457127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f++tG Cky ++C+F+H++
  XP_027123004.1 431 PGQPDCSYFLKTGDCKYKANCRFNHPK 457
                     5789*********************96 PP

5zf-CCCH36.58.3e-12478503227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+ r+G+Ck+G+ CkF H++
  XP_027123004.1 478 DQSICSFYNRYGICKFGPACKFDHPE 503
                     6789********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MGGGASTTME SKPSEEKQHF QCSEHQNPQN GVAPQNPQSA ERGLVKPQSS EPETTPVSSS  60
DHHLTVIGAE LKPQMLPVES KGGSGAGDEI DGQNGLDEDG ILRKTLDEEI HQVIYKEALN  120
EAVMNLALGE DRNGEVEVGL GMGTNGEEFW EGGSDVLRGR GVDVDELFQG RYGNDEVGGE  180
VEGEENYGTE EASGYSGDRT YNRRFEYPLR LDAEDCAYYM KTGSCKFGMN CKFNHPPKRR  240
NQGTRDKAKP RVEDSERLGQ TECKYYLTSG GCKFGSACKY NHSREKSALA PVVEFNFLGL  300
PIRPQGEKEC PYYMRTGSCK YGSNCKFNHP DPTSVAGNDH ASGFVAGGSA QLHGAAQTSA  360
SSWSSASMIF PPAQGMPSNA EWNGYQATVY PTSERSLPTP PAFAMNNPVS ETNFYAPLQQ  420
QMPVDEYPQR PGQPDCSYFL KTGDCKYKAN CRFNHPKFQS SKSTSCALSD KGLPLRPDQS  480
ICSFYNRYGI CKFGPACKFD HPENWGKSVA SGGVRMARNE MEAGFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-104C3H family protein