PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122788.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 577aa MW: 62373.4 Da PI: 4.9892

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	389	431	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_027122788.1 389 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 431 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MLSRVNSMVW MDDKDQETAS WDHHPSTMNN NSNNEQNGVL ENREDMEMGS IPTFKSMLGV 60 EDEDWYLTTT NHAETNNPNN NNAGTMQSSH LDMRDITFSA NFAEADHQNL ILQAVDSSAS 120 CSPSPASVFN NLDPSQVHHY FLQPPPRSNL LSGLNTLSTT QLDNGSFDLG CESGFLESHQ 180 GLGGFSTRGG VGVLGVGFND LSSQTQLGSP NLNSGSQFST ANLLQMPQNN GGFGPLGFGE 240 CSGNVNSLFL NRSKLLQPLD NFTSTGAQPT LFQKRAALRK NLACSSSNLG VLGGEIGQSS 300 GNSESYDKKK EVGEASGLKR KGSDFDDLED VSIDGSNLNY DSDDLLENHS KVVGEGVKNG 360 GNSSNANSTV TGGEDQKGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI 420 LGDAIEYLKE LLQKINDLQN ELESTPAASA LTPTTPFYPL TPTASALPCR IKEELCPSAF 480 ASPLSSPTGQ PARIEVRLRE GRAVNIHMFC GRRPGLLLST MRALDSLGLD IQQAVISCFN 540 GFALDIFRAE QCNEGQDIPP EHIKAVLLDS AGFQGIV

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MLSRVNSMVW MDDKDQETAS WDHHPSTMNN NSNNEQNGVL ENREDMEMGS IPTFKSMLGV  60
EDEDWYLTTT NHAETNNPNN NNAGTMQSSH LDMRDITFSA NFAEADHQNL ILQAVDSSAS  120
CSPSPASVFN NLDPSQVHHY FLQPPPRSNL LSGLNTLSTT QLDNGSFDLG CESGFLESHQ  180
GLGGFSTRGG VGVLGVGFND LSSQTQLGSP NLNSGSQFST ANLLQMPQNN GGFGPLGFGE  240
CSGNVNSLFL NRSKLLQPLD NFTSTGAQPT LFQKRAALRK NLACSSSNLG VLGGEIGQSS  300
GNSESYDKKK EVGEASGLKR KGSDFDDLED VSIDGSNLNY DSDDLLENHS KVVGEGVKNG  360
GNSSNANSTV TGGEDQKGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI  420
LGDAIEYLKE LLQKINDLQN ELESTPAASA LTPTTPFYPL TPTASALPCR IKEELCPSAF  480
ASPLSSPTGQ PARIEVRLRE GRAVNIHMFC GRRPGLLLST MRALDSLGLD IQQAVISCFN  540
GFALDIFRAE QCNEGQDIPP EHIKAVLLDS AGFQGIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	397	KKKGLPAKNLMAERRRRKK
2	391	398	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-116	bHLH family protein