PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122786.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 852aa    MW: 95277.4 Da    PI: 7.0808
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-24146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      +  ++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_027122786.1 146 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 237
                     99****************************963.3334459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_027122786.1 238 GELRVGVRRA 247
                     99*****996 PP
2Auxin_resp118.26.8e-39272354183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++++dp rWp+SkWr+Lk
  XP_027122786.1 272 AWHAIQTNTFFTVYYKPRTSPSEFIVPFDQYMESVKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGTEEADPKRWPESKWRCLK 354
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    
MAASEVSIKG YTEPSDGPRG LPEVAKSVSG AGKVDAETAL YTELWRACAG PLVTVPREKE  60
LVYYFPQGHI EQVEASTNQV ADQAMPVYNL PWKILCRVIN VQLKAEPDTD EVFAQVTLMP  120
EPDQDENAVK KEPVPPPSPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ  180
PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL  240
RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTNT FFTVYYKPRT SPSEFIVPFD  300
QYMESVKNSY SIGMRFKMRF EGEEAPEQRF TGTIVGTEEA DPKRWPESKW RCLKVRWDET  360
STIPRPDRVS PWKIEPALTP PALNPLPVPR PKRPRPNILP SSPDSSVLTR EGSSKITIDP  420
SPASGLSRVL QGQEPSTLRG TLGESNESDS LEKPVIWPPS LDDDKLDVCA SSRRYASDKW  480
LPLGRPESSF TDLLAGFGSQ INSPNEFSTT SADQSVVSAN SKKRQLQEHE GKFNYLGSPW  540
SLMSSGLSLH LMEPSVKTRG QGTDISYQTR GDARYGSFNE YPLLPSNRLD NQQANWLMPP  600
PMTSYIQMPP NSREMVHKPV LVLPHEVVKP KEGNCKLFGI PLISNSMPLE PASSHKNRTI  660
KSVGQLLPGM HTHRSSLSES DQRSEQPKGA KVADNVVASN EQDKQCQTFN QVTRDREGKV  720
SGGSTRSCTK VHKQGIALGR SVDLTKFNNY DELIAELDRL FEFNGELKYR TKHWLVVYTD  780
DEGDMMLVGD DPWQEFCGMV RKIFIYTREE VQRMNPGTLN SRGEEQSSVA EGLDAKEVKN  840
LLHPSASSPD DC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392396KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein