PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027122589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | TCP | ||||||||
Protein Properties | Length: 440aa MW: 45737.5 Da PI: 5.888 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.1 | 1.1e-36 | 122 | 223 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + ss s++++++ g XP_027122589.1 122 APPKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngalkiPTTSSTSMTAAEGDG 216 56799***********************************************************8888844432222222112222222211111 PP TCP 89 kaaksaakskksq 101 a +++++ XP_027122589.1 217 ------ARKRRKR 223 ......1222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence |
MLLRFLGDFF YIKVFAFSMA SVENSQNLEP DDDEVNNDAH DLLLGDPHHY TITAVGPAFE 60 QSPRVAAAVD PTPSPPPPPP PFLQSSDIVP MLKEEPADND VEGSIPVGLT PIHHLDKPML 120 LAPPKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLERAEPAII 180 EATGTGTVPA IAVSVNGALK IPTTSSTSMT AAEGDGARKR RKRASTSEFY EVNDNSSFAP 240 VAPITPQGLV PVWTVGAHGA PGMVPTSVVP SGAFFMIPPT GATIAAAAAA AGAVPPRPSN 300 QPQLWAIPAA AATPVFGVSG RPISNFVSAM EPGPSVNFAT DGGGGDEGEG RMGSALPNIV 360 GSGDKNFSGK ISAMAPFASS TSSRDGAATV GTRATGSPTG ATSAQVLRDF SLEVYDKREL 420 QFMVGAAAGA GNDQTPSSKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 2e-60 | TCP family protein |