PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122589.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 440aa    MW: 45737.5 Da    PI: 5.888
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-361222232101
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 
                     a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++         + ss s++++++ g
  XP_027122589.1 122 APPKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngalkiPTTSSTSMTAAEGDG 216
                     56799***********************************************************8888844432222222112222222211111 PP

             TCP  89 kaaksaakskksq 101
                           a +++++
  XP_027122589.1 217 ------ARKRRKR 223
                     ......1222222 PP

Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MLLRFLGDFF YIKVFAFSMA SVENSQNLEP DDDEVNNDAH DLLLGDPHHY TITAVGPAFE  60
QSPRVAAAVD PTPSPPPPPP PFLQSSDIVP MLKEEPADND VEGSIPVGLT PIHHLDKPML  120
LAPPKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLERAEPAII  180
EATGTGTVPA IAVSVNGALK IPTTSSTSMT AAEGDGARKR RKRASTSEFY EVNDNSSFAP  240
VAPITPQGLV PVWTVGAHGA PGMVPTSVVP SGAFFMIPPT GATIAAAAAA AGAVPPRPSN  300
QPQLWAIPAA AATPVFGVSG RPISNFVSAM EPGPSVNFAT DGGGGDEGEG RMGSALPNIV  360
GSGDKNFSGK ISAMAPFASS TSSRDGAATV GTRATGSPTG ATSAQVLRDF SLEVYDKREL  420
QFMVGAAAGA GNDQTPSSKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-60TCP family protein