PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122522.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 786aa MW: 88453.5 Da PI: 4.8755

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.5	9.9e-17	601	645	3	47
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++++ e+++k+F l++kdAA +L+v++++LKr+CR++GI+ WP+ XP_027122522.1 601 DKLDREKVEKHFGLKLKDAAESLKVSPSTLKRKCRKLGIPNWPRK 645 578999*************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MAEVRTRRPN DVEDIDGTFS KSEFLDYIGT KLHTSVSTSR KSFRVFWDEE DDESDRHQTL 60 FSQVGPPLLP PPIVKDKIKT ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC 120 LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD YVDVDVDVDW NGGGGVRESV LLTGPPSRVF 180 LRGLPEYSPN VEFYADSEYA LRDEAMGRKI SDYMAVPVFD PNSRECIGVI ELLSTADSVR 240 EMDNPAYIFG LISTALQVLE LRTSNFTSHF DMDSDLEKSS TDISHALCDI HKALVEACQT 300 HKLPFAQTWM PQLGKCQSYT DNALSTTSNE YYLEHAGFSL FRDICESFQL LRGQGVVWQA 360 FSSGTPCFCG DMTKLSIADY SFAHVGKKVL LDSSLAICLK SDHTGDHVYV LELFLPFRTA 420 DPTKLLEAVL LTMKKHLNSF RLASGPTLGD EMFVEVFRVS KEDKLEFFTL FHTTGGSDGL 480 QNQQLFPQKN WEFSDVDYAK ILVDEGSWWD QVISYVDYAP VSITSRGTSD DVFGWKEDSC 540 DTPSVKEGNS YINSAASTSR YPEQDNLARL VAEDAQFSAF PNLDVDFWDN KEGISSASDL 600 DKLDREKVEK HFGLKLKDAA ESLKVSPSTL KRKCRKLGIP NWPRKRNQGT CFATSTESNK 660 DREIRNAEYG QEVSHPNVSS QEGTTSSKHN SSQAATIAKD SFMMIKAAYG EIKKIKFPLP 720 FSSPLVDLEM EAASRLELKV GNFKLWYLDE DDDWILIIRD ADLRIMESMG KNTIKVSITH 780 GDDSPY

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MAEVRTRRPN DVEDIDGTFS KSEFLDYIGT KLHTSVSTSR KSFRVFWDEE DDESDRHQTL  60
FSQVGPPLLP PPIVKDKIKT ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC  120
LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD YVDVDVDVDW NGGGGVRESV LLTGPPSRVF  180
LRGLPEYSPN VEFYADSEYA LRDEAMGRKI SDYMAVPVFD PNSRECIGVI ELLSTADSVR  240
EMDNPAYIFG LISTALQVLE LRTSNFTSHF DMDSDLEKSS TDISHALCDI HKALVEACQT  300
HKLPFAQTWM PQLGKCQSYT DNALSTTSNE YYLEHAGFSL FRDICESFQL LRGQGVVWQA  360
FSSGTPCFCG DMTKLSIADY SFAHVGKKVL LDSSLAICLK SDHTGDHVYV LELFLPFRTA  420
DPTKLLEAVL LTMKKHLNSF RLASGPTLGD EMFVEVFRVS KEDKLEFFTL FHTTGGSDGL  480
QNQQLFPQKN WEFSDVDYAK ILVDEGSWWD QVISYVDYAP VSITSRGTSD DVFGWKEDSC  540
DTPSVKEGNS YINSAASTSR YPEQDNLARL VAEDAQFSAF PNLDVDFWDN KEGISSASDL  600
DKLDREKVEK HFGLKLKDAA ESLKVSPSTL KRKCRKLGIP NWPRKRNQGT CFATSTESNK  660
DREIRNAEYG QEVSHPNVSS QEGTTSSKHN SSQAATIAKD SFMMIKAAYG EIKKIKFPLP  720
FSSPLVDLEM EAASRLELKV GNFKLWYLDE DDDWILIIRD ADLRIMESMG KNTIKVSITH  780
GDDSPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	8e-58	Nin-like family protein