PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122340.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 602aa MW: 69881.4 Da PI: 9.0716

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	9.9e-24	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ +++ + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027122340.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGMTTSRRYSCCKEGVKRKYESD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6****************998.8888************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MDCSKLAENG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG MTTSRRYSCC 60 KEGVKRKYES DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSV TQGFQAEISE DAGLSLKQSH ELMGTEAGGM GNVGYTRDDL KRYLRTRRKR 180 SLKYGEARML IDYNFFGDVV TFDTTYKTNK EYRPLGVFVG FNQHRQIVIF GAALMYDETI 240 DSFKWVFGTF LEAMCGKHPN TILTDQDHAM AAALSIVMPE TFHGLCTFHI RRNFMKHLGN 300 HYKENSDLPY MFGACMYEFE EVEQFNRVWE AMVKKHNLEN NEWLSELYKI RDKWARCMMK 360 ERWTAGMRST QLSESLNAAI KNHLKLDHDL VQFFRHFNRV VDEKRYNELI AEYEMRQKLP 420 MVGLRQTPML VHASETYSPT VFVAFQNEYG ESTAMVILRQ QDAAMFVEFT VMRYDGGPER 480 TVVFNRNDLS VRCSCKKYEN EGILCGHALK VFDTVGIKII PPEYIKRRWT KRARAGDCFD 540 RRGQEVVADP KVMISTRYRE LAPAMIKVAT RAAMSEDTSK VAITVISDLS KRVELLLSER 600 TR

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MDCSKLAENG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG MTTSRRYSCC  60
KEGVKRKYES DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSV TQGFQAEISE DAGLSLKQSH ELMGTEAGGM GNVGYTRDDL KRYLRTRRKR  180
SLKYGEARML IDYNFFGDVV TFDTTYKTNK EYRPLGVFVG FNQHRQIVIF GAALMYDETI  240
DSFKWVFGTF LEAMCGKHPN TILTDQDHAM AAALSIVMPE TFHGLCTFHI RRNFMKHLGN  300
HYKENSDLPY MFGACMYEFE EVEQFNRVWE AMVKKHNLEN NEWLSELYKI RDKWARCMMK  360
ERWTAGMRST QLSESLNAAI KNHLKLDHDL VQFFRHFNRV VDEKRYNELI AEYEMRQKLP  420
MVGLRQTPML VHASETYSPT VFVAFQNEYG ESTAMVILRQ QDAAMFVEFT VMRYDGGPER  480
TVVFNRNDLS VRCSCKKYEN EGILCGHALK VFDTVGIKII PPEYIKRRWT KRARAGDCFD  540
RRGQEVVADP KVMISTRYRE LAPAMIKVAT RAAMSEDTSK VAITVISDLS KRVELLLSER  600
TR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-94	FAR1 family protein