PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122283.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 382aa MW: 44783 Da PI: 6.937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	21	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+Y+ vGFsvrk++ +k ++ +t+r+++C keg++++ + + +k +rtr et+tgC+ak+++ +++ + k++v +l+ eHnH+l XP_027122283.1 21 NFYNRYGLVVGFSVRKDYLNKD-KDSVVTSRRYTCCKEGFKRRYEGD-VKPKRTRGETKTGCEAKMRIILNReTMKYQVRDLVIEHNHTL 108 6****************999.6777************9999.9****************99989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEEALCPKIG IEFQSEDKAY NFYNRYGLVV GFSVRKDYLN KDKDSVVTSR RYTCCKEGFK 60 RRYEGDVKPK RTRGETKTGC EAKMRIILNR ETMKYQVRDL VIEHNHTLHI SECAHMMRSQ 120 RKVSIFQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIDY THDDLKRYLR TKRERGLKYD 180 ETGAMLRYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT 240 NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFVEAVCGKH PKTIFTNQDV 300 AMAAAISTVM PLTYHGLCNF HIRVNFLKHL GNYYKDDSNL PYKFVECMYE IEDKNEFIMA 360 WDAMLKEHKF ETNEWLRGIY AY

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEEALCPKIG IEFQSEDKAY NFYNRYGLVV GFSVRKDYLN KDKDSVVTSR RYTCCKEGFK  60
RRYEGDVKPK RTRGETKTGC EAKMRIILNR ETMKYQVRDL VIEHNHTLHI SECAHMMRSQ  120
RKVSIFQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIDY THDDLKRYLR TKRERGLKYD  180
ETGAMLRYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT  240
NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFVEAVCGKH PKTIFTNQDV  300
AMAAAISTVM PLTYHGLCNF HIRVNFLKHL GNYYKDDSNL PYKFVECMYE IEDKNEFIMA  360
WDAMLKEHKF ETNEWLRGIY AY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1 family protein