PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122234.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 414aa MW: 47580 Da PI: 7.1249

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.4	1.4e-19	68	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ +a t tgC a++++k + + k++vt++ eHnH+la XP_027122234.1 68 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDQKREAKAITTTGCGACFRMKYDIeSVKYVVTRFIMEHNHPLA 158 6**************98887.8998999********9988768899999***********998899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGQDGVLKTH DMVQETENGK MGMDGCGSEE SGGSIGGHED EEADKLVGAI GVDDVMKLTF 60 DTEEEAGEFY NLYAKLSGFG IRKSNAKRDA DGISRFRKWV CCCEGYRNEK WFNYEDQKRE 120 AKAITTTGCG ACFRMKYDIE SVKYVVTRFI MEHNHPLASE ASVQHIRSHR KVRDAEYAQA 180 KSLKLVGARI YQIMKHFVIK AGGYSNMGFC IKDLYNRMDE ERRKDIFNGD AEGALEFLAA 240 KKDADDMFFY KYHVDNEGRL ARLFWADSKS CVDFSVFGDV LVFDTTYKTN KYRKPLVVLA 300 EVNNHLNSTV FGCALLLDER IETYEWVLST FVEAMKGRKP VAVMTDGDSA MRKAIKNLLP 360 DACHRLCSWH LHRNARSNIR CEEFNNRLYD LMARKFSTLE FEDRWVRYEK HSKV

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGQDGVLKTH DMVQETENGK MGMDGCGSEE SGGSIGGHED EEADKLVGAI GVDDVMKLTF  60
DTEEEAGEFY NLYAKLSGFG IRKSNAKRDA DGISRFRKWV CCCEGYRNEK WFNYEDQKRE  120
AKAITTTGCG ACFRMKYDIE SVKYVVTRFI MEHNHPLASE ASVQHIRSHR KVRDAEYAQA  180
KSLKLVGARI YQIMKHFVIK AGGYSNMGFC IKDLYNRMDE ERRKDIFNGD AEGALEFLAA  240
KKDADDMFFY KYHVDNEGRL ARLFWADSKS CVDFSVFGDV LVFDTTYKTN KYRKPLVVLA  300
EVNNHLNSTV FGCALLLDER IETYEWVLST FVEAMKGRKP VAVMTDGDSA MRKAIKNLLP  360
DACHRLCSWH LHRNARSNIR CEEFNNRLYD LMARKFSTLE FEDRWVRYEK HSKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-60	FAR1 family protein