PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122193.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 304aa MW: 33995.3 Da PI: 8.2463

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.7e-16	19	100	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +s++ +p +f+++++++ ++t +le ++g sW + + k ++ +++++GW++Fv++n L+ Df++F ++g s+f +v +f k XP_027122193.1 19 NSDCEKIPPDFVKKFDKDV--PQTFILEGPQGSSWLILV--VKVGECFYFQEGWQNFVEDNSLENDDFLTFCYSGCSTF--YVEIFGK 100 5566789******8774..569***********..8888889**********************9985666..9999875 PP
2	B3	46.3	7.7e-15	174	255	5	92
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 lt+ +++k + +p++f e+ +++ ++ + + +gr+W+v++ k+++ ++l++GW+ F+k+n LkegD + F+l+++ ++ XP_027122193.1 174 LTKTYANK--YVKFPRDF--ENVENHWRNGKSAFLRVQGREWKVNI--AKSGKYFFLSTGWSTFAKENSLKEGDECNFELIDNnADG-I 255 43333333..36778888..33333344446677888*******..999999************************9873443.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MAGIPALSSL NAPLASLGNS DCEKIPPDFV KKFDKDVPQT FILEGPQGSS WLILVVKVGE 60 CFYFQEGWQN FVEDNSLEND DFLTFCYSGC STFYVEIFGK HGCRKKVACT TWKDNAMHRN 120 DNAVEQLHGK SNNSPKQMGR SLRSGTRGSC SEISQAGKVQ DNSRHNSDPF KVQLTKTYAN 180 KYVKFPRDFE NVENHWRNGK SAFLRVQGRE WKVNIAKSGK YFFLSTGWST FAKENSLKEG 240 DECNFELIDN NADGIVLKVN TSKFPDKSSS LEVASLVKSY KSGDCVVVIR IGKDGVSYAI 300 CGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	6e-15	B3 family protein