PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122088.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 197aa    MW: 22057.1 Da    PI: 9.3679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-066486123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_027122088.1 64 FVCEICNKGFQRDQNLQLHRRGH 86
                    89*******************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MNNSSAMATV PSASEEASIS SAGNPMIAAQ VGPVKKKRNL PGMPDPDAEV IALSPKTLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRNGKEV KKRVYVCPEA TCIHHDPSRA  120
LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VISDWKAHTK TCGTREYRCD CGSDEDDEDV  180
VIESSTASAY SVNWRAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-95C2H2 family protein