PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122062.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 602aa MW: 67789.4 Da PI: 5.1433

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.2e-13	344	388	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+k+Lq XP_027122062.1 344 LMAERKRRKKLNDRLYALRALVPKiS------KLDRASILGDAIEYVKELQ 388 589*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MNLVQNFTER LRPILGLKSW DYFAIWRLAE DQRSLELVDC CCAGTENIHS GEELFPLSPS 60 LPCRDVIYQH PRTKACDLLA QLPSSIPLDS GCGMYGETLM SNQARWLNFS PNVDSSLSGN 120 SMGTRVLTPV PGGLVEFYVA KQVPEDQEII EFITAQCNIS LEQQSIFIHA DTIHSSFSAN 180 VDGLHAVEGS DGKASCKIFS SPVNPSTGKQ TLELPSDVSM DQIHLNHSPL NIAQAFSYIS 240 DNAGSKNDTM FYEGTHELNT FTSSMENGIQ DMEAALQKHM MSQSGNMLMQ MMEPLPNKED 300 QGNENDSYKQ ENGPSNSVSD SDPNDDEDDA KYRRRTEKGQ SKNLMAERKR RKKLNDRLYA 360 LRALVPKISK LDRASILGDA IEYVKELQKQ VKDLQDELEE NSDDEDPRNS GITNNPNILP 420 PNVFQGNGMN FGVYKSEHET TSNGNHKRIS GNGGTDLSSQ EPENIDDKVQ QMEPQVEVTQ 480 LDGNEFFVKV FCEHKPGGFV RLMEALNSIG LEVNNVNATR HTCLVSYIFK VERKDSEMLQ 540 ADHVRESLLE LTRNPSRGWS DMAKASENED KMDLYQLHHH HHHHSRLHNH QINSHHLQHL 600 HN

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MNLVQNFTER LRPILGLKSW DYFAIWRLAE DQRSLELVDC CCAGTENIHS GEELFPLSPS  60
LPCRDVIYQH PRTKACDLLA QLPSSIPLDS GCGMYGETLM SNQARWLNFS PNVDSSLSGN  120
SMGTRVLTPV PGGLVEFYVA KQVPEDQEII EFITAQCNIS LEQQSIFIHA DTIHSSFSAN  180
VDGLHAVEGS DGKASCKIFS SPVNPSTGKQ TLELPSDVSM DQIHLNHSPL NIAQAFSYIS  240
DNAGSKNDTM FYEGTHELNT FTSSMENGIQ DMEAALQKHM MSQSGNMLMQ MMEPLPNKED  300
QGNENDSYKQ ENGPSNSVSD SDPNDDEDDA KYRRRTEKGQ SKNLMAERKR RKKLNDRLYA  360
LRALVPKISK LDRASILGDA IEYVKELQKQ VKDLQDELEE NSDDEDPRNS GITNNPNILP  420
PNVFQGNGMN FGVYKSEHET TSNGNHKRIS GNGGTDLSSQ EPENIDDKVQ QMEPQVEVTQ  480
LDGNEFFVKV FCEHKPGGFV RLMEALNSIG LEVNNVNATR HTCLVSYIFK VERKDSEMLQ  540
ADHVRESLLE LTRNPSRGWS DMAKASENED KMDLYQLHHH HHHHSRLHNH QINSHHLQHL  600
HN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	353	RRRTEKGQSKNLMAERKRRKK
2	347	354	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-134	bHLH family protein