PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121897.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 518aa MW: 60423.4 Da PI: 8.9656

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.3	1.2e-08	26	85	1	67
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 kfYn+YA ++ Fs+rk++ +k ++g +t r++ C keg +++ +++ +++ + +C ++ XP_027121897.1 26 KFYNKYAFKMDFSIRKDYLNKD-KDGVTTPRRYSCCKEGVKRKYEEH------NHELHIAQCAHMMP 85 6***************9998.8999**********99987776......66666667766664 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MNCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMDFSIR KDYLNKDKDG VTTPRRYSCC 60 KEGVKRKYEE HNHELHIAQC AHMMPSQRKV SVAQGFQTEI SEDAGFSLKQ SHEFMGKEVG 120 GMGNVGYTRN DLKRYLRTRR ERSLKYGEAV TFDTTYKTNK EYRPLGVFVG FNQHRQIVIF 180 EAALMYDEMI DSFKWAFGTF LEAMCGKRPN TILTDQDHAM AAVISVVMPE TFHGLCMFHI 240 RRNFMKHLGN HYKENSDLPY MFGACMYEFE EVEQFNRVWE AIVKKHNLEN NEWLSGLYRI 300 RDKWARHFNR VVDEKRHNEL IAEYEIRQKL PMVGLRQTPM LVHASETYAP TIFVAFQNEY 360 GESIAMVILR QQDAAMFVEF TVIRYDGRPE RIVVFNQNDL SVRCSCKKYK NEGILCGHAL 420 KVFDTVGIKI IPPEYVKKRW TKRARVGDCF DRRRREVVTD PKVTISTRYR ELAPAMIKVA 480 TRAPMSEDTS KVAITVISNL AKRVDLLLSE SEKPTFAK

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MNCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMDFSIR KDYLNKDKDG VTTPRRYSCC  60
KEGVKRKYEE HNHELHIAQC AHMMPSQRKV SVAQGFQTEI SEDAGFSLKQ SHEFMGKEVG  120
GMGNVGYTRN DLKRYLRTRR ERSLKYGEAV TFDTTYKTNK EYRPLGVFVG FNQHRQIVIF  180
EAALMYDEMI DSFKWAFGTF LEAMCGKRPN TILTDQDHAM AAVISVVMPE TFHGLCMFHI  240
RRNFMKHLGN HYKENSDLPY MFGACMYEFE EVEQFNRVWE AIVKKHNLEN NEWLSGLYRI  300
RDKWARHFNR VVDEKRHNEL IAEYEIRQKL PMVGLRQTPM LVHASETYAP TIFVAFQNEY  360
GESIAMVILR QQDAAMFVEF TVIRYDGRPE RIVVFNQNDL SVRCSCKKYK NEGILCGHAL  420
KVFDTVGIKI IPPEYVKKRW TKRARVGDCF DRRRREVVTD PKVTISTRYR ELAPAMIKVA  480
TRAPMSEDTS KVAITVISNL AKRVDLLLSE SEKPTFAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	455	KKRWTKRARVGDCFDRRRR
2	451	456	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-62	FAR1 family protein