PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027121868.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 324aa    MW: 34775.4 Da    PI: 8.1694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027121868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042138160123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_027121868.1 138 FSCNYCQRKFCSSQALGGHQNAH 160
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MKAKTTRKEA CDLSHETSAS SSSSSTIASL SDTNSLACPN NSSSMDSPKL EEVQHQNHKQ  60
EDDEEDVKTP HLALDLSLAS AKDLKPELNL IDCLHNSMGV SSQINHPSST SASTDAINPL  120
GVNNNSASNN QEPERRVFSC NYCQRKFCSS QALGGHQNAH KRERTIAKRG NRIGGSTGGA  180
SSSSAAAAFG HDSLLQRYPS MASLPLHGSF NNNRSLGIQA HSMIHKPAYF ASNHVGFSPM  240
YGQAGWSRKP LDQQPAIGRL APENYHMGSS SIGGAARFDT NINQKFSAPV VEGIGGSYKW  300
DSGPPPNLKT SQEELKKLDL SLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-39C2H2 family protein