PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121781.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 739aa MW: 85740.8 Da PI: 5.1455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	3e-22	132	216	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++ eHnH++ XP_027121781.1 132 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKIEHNHPFD 216 69**************************************98877.....8999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence
MEGSSEDGEQ LHQDEGSEQE IDGEEVFGFE STDLGDDSNQ VLAIEHVDIA NTADQMLGIN 60 RDDLENDKQV LDFERNGHDH NSEQMLEIQC GNLDNGIDRD TVIDDQNLVS GAKDYLPPVV 120 GMEFESYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTMKEASSR 180 RKETRTGCLA MIRLRLVESN RWRVDEVKIE HNHPFDPERV QNCKSHKKMD PGSKRKLEPS 240 VDVEVRTIKL YRTPVIDTVG NRSSNERESG NQVDQSKHLK LHQGEAEYIS NFFGRLQLTN 300 PNFFYVMDLN DEGHLRNVLW IDSRSRAAYG YFGDVVAIDT TCLSKSYNIP LLLFVGVDHH 360 LQSILLACGL LVDETMETYI WLLRAWLSCM SGRPPQTVLT DRCKALQSAI SEVFPRTHHR 420 LYLPLVMQSI LDKLEVGASK VFQDVLNRTV YNSLKADEFE MAWEEMIQHF GLRDHKWLQT 480 YYEERERWAP VYLKDTFFAG LVTFPPGDCM SPFFDGYVNS QTTLKEFFNI YELVLQKKHQ 540 KEALDDLESR KYTPVLRTRC NYEVQLSEVY TKEIFLKFQV ELELMSDCFN VTQIHANGPI 600 ITYVIKERDA EGDMNNARNF EVMYDKVGLE VRCICSCFNF RGYLCRHALQ ILTYNGIEDI 660 PSQYILSRWR KDFKRLYAPD IGSNVIDVTN PVQWFDHLYR RAMQVVEEGM TSQDHYTVAW 720 QAFKESLNKV RLVADRHVQ

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence

MEGSSEDGEQ LHQDEGSEQE IDGEEVFGFE STDLGDDSNQ VLAIEHVDIA NTADQMLGIN  60
RDDLENDKQV LDFERNGHDH NSEQMLEIQC GNLDNGIDRD TVIDDQNLVS GAKDYLPPVV  120
GMEFESYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTMKEASSR  180
RKETRTGCLA MIRLRLVESN RWRVDEVKIE HNHPFDPERV QNCKSHKKMD PGSKRKLEPS  240
VDVEVRTIKL YRTPVIDTVG NRSSNERESG NQVDQSKHLK LHQGEAEYIS NFFGRLQLTN  300
PNFFYVMDLN DEGHLRNVLW IDSRSRAAYG YFGDVVAIDT TCLSKSYNIP LLLFVGVDHH  360
LQSILLACGL LVDETMETYI WLLRAWLSCM SGRPPQTVLT DRCKALQSAI SEVFPRTHHR  420
LYLPLVMQSI LDKLEVGASK VFQDVLNRTV YNSLKADEFE MAWEEMIQHF GLRDHKWLQT  480
YYEERERWAP VYLKDTFFAG LVTFPPGDCM SPFFDGYVNS QTTLKEFFNI YELVLQKKHQ  540
KEALDDLESR KYTPVLRTRC NYEVQLSEVY TKEIFLKFQV ELELMSDCFN VTQIHANGPI  600
ITYVIKERDA EGDMNNARNF EVMYDKVGLE VRCICSCFNF RGYLCRHALQ ILTYNGIEDI  660
PSQYILSRWR KDFKRLYAPD IGSNVIDVTN PVQWFDHLYR RAMQVVEEGM TSQDHYTVAW  720
QAFKESLNKV RLVADRHVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein