PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121771.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 384aa MW: 43813.9 Da PI: 8.0548

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.5	9.5e-38	122	277	4	133
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa.......secea 75 kdrhski T+ g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl+q+ ai e+++ ss+s+ + XP_027121771.1 122 NKDRHSKINTAHGPRDRRMRLSLPVARKFFDLQDVLGFDKASKTVDWLLRQSSSAIEEIMRGlprmrhsrsvgantsvSSTSEgevvsgiE---- 212 79*********************************************************999887777666544331111121221111.... PP TCP 76 esssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +s++ k++++++k+ k +++a + la+esr+ ar+rar+rt ek ++ XP_027121771.1 213 ---------DSIRdtthdnqqanisvkmkaKSSSKKEKKAKLVRRTA-LHRLARESRKVARERARKRTIEKRKLG 277 .........11113333333455667776444444445555555555.899*****************98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MYPSSTNCTH NPIPFSWESV EHRPLFHSDI NPNSKFEDPL LTSLFHFASP CIYEDAVNEF 60 PWQQLDDTYL YQQQLSTAEN SLAEIVNHMA DPNSDPVHGL KQDWNKNGES TGEKVTRKRL 120 SNKDRHSKIN TAHGPRDRRM RLSLPVARKF FDLQDVLGFD KASKTVDWLL RQSSSAIEEI 180 MRGLPRMRHS RSVGANTSVS STSEGEVVSG IEDSIRDTTH DNQQANISVK MKAKSSSKKE 240 KKAKLVRRTA LHRLARESRK VARERARKRT IEKRKLGESR LCFAARDRES WGSFETDEGS 300 GTPAQKIHPS IEGLTEVEEL NPHERRLLET REYAAGEILL TTGNWNPSTI PVYQQNTEIS 360 NEHQFSDFQF CGKVWEAYDM SLGG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MYPSSTNCTH NPIPFSWESV EHRPLFHSDI NPNSKFEDPL LTSLFHFASP CIYEDAVNEF  60
PWQQLDDTYL YQQQLSTAEN SLAEIVNHMA DPNSDPVHGL KQDWNKNGES TGEKVTRKRL  120
SNKDRHSKIN TAHGPRDRRM RLSLPVARKF FDLQDVLGFD KASKTVDWLL RQSSSAIEEI  180
MRGLPRMRHS RSVGANTSVS STSEGEVVSG IEDSIRDTTH DNQQANISVK MKAKSSSKKE  240
KKAKLVRRTA LHRLARESRK VARERARKRT IEKRKLGESR LCFAARDRES WGSFETDEGS  300
GTPAQKIHPS IEGLTEVEEL NPHERRLLET REYAAGEILL TTGNWNPSTI PVYQQNTEIS  360
NEHQFSDFQF CGKVWEAYDM SLGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-24	TCP family protein