PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027121755.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 93aa    MW: 10538.8 Da    PI: 8.797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027121755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.9e-081059554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    h+++ r   d+i +  ++L++llP++ +  s K+s a +L+++++YI+sL
  XP_027121755.1 10 HSAASRITDDQIIDLVSKLQQLLPELRNRCSDKVSAARVLQETCNYIRSL 59
                    55666666678889999********7789999****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    
MSSRRSRSRH SAASRITDDQ IIDLVSKLQQ LLPELRNRCS DKVSAARVLQ ETCNYIRSLH  60
REVDDLSERL SELLANSDTS QAALIRSLLS QQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.14e-39bHLH family protein