PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121703.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 624aa MW: 67448.6 Da PI: 6.5855

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	271	330	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r aed +++++tYeg+Hnh+ XP_027121703.1 271 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApNCPVRKQVQRYAEDMSILTTTYEGTHNHP 330 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MDMEAAYGGN SVKKEDQEKK AESIGDEDCC TEEVLHKVGN GRRAQDDKIN QSSPNRKDFT 60 SSIQGSFMPN MEMSSSEFNS NVSSSALAGR ADLLKSTKAE MGEVMEENQK LRMHLDRVMK 120 EYRALQMQFH DMVQQEPNKS SSTISTHRET GEPELVSLSL GMSSSDGKKD DYFSRKTHGK 180 EKVDNDADDK EVLALGLDCK FELPKYQENE PSPTPSLEAS SGEVKEEEGG KTWPPKNSLK 240 NVRNEEDEVS QQTSVKRARV SVRVRCDTPT MNDGCQWRKY GQKTAKGNPC PRAYYRCTVA 300 PNCPVRKQVQ RYAEDMSILT TTYEGTHNHP LPISATAMAS TTSAAASMLI SGSTTSTSGL 360 SPSVASILSS ASFNGLNFYL SDNTKPTPIY LPNSSLSSSS SCPTITLDLT TSSNASSHPS 420 KLGSFPPRSY STIQNLNFSS LESNALPLSW SNGVLGYGTQ AQPYNKNQNI GSLNFGRQLQ 480 EAHYQSYLQK NNSISNSSTQ QSLPAETLAA ATKAITSDPS FQSALAAALT SIIGPGTSST 540 ARVVGSQTAA DESGHNLKLI DQSFPILSSF PPSTSTVNKC ASTFLSSSNP PSSANSQPGS 600 LMFLSPSLSF PTPNNNSTSN VRLH

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MDMEAAYGGN SVKKEDQEKK AESIGDEDCC TEEVLHKVGN GRRAQDDKIN QSSPNRKDFT  60
SSIQGSFMPN MEMSSSEFNS NVSSSALAGR ADLLKSTKAE MGEVMEENQK LRMHLDRVMK  120
EYRALQMQFH DMVQQEPNKS SSTISTHRET GEPELVSLSL GMSSSDGKKD DYFSRKTHGK  180
EKVDNDADDK EVLALGLDCK FELPKYQENE PSPTPSLEAS SGEVKEEEGG KTWPPKNSLK  240
NVRNEEDEVS QQTSVKRARV SVRVRCDTPT MNDGCQWRKY GQKTAKGNPC PRAYYRCTVA  300
PNCPVRKQVQ RYAEDMSILT TTYEGTHNHP LPISATAMAS TTSAAASMLI SGSTTSTSGL  360
SPSVASILSS ASFNGLNFYL SDNTKPTPIY LPNSSLSSSS SCPTITLDLT TSSNASSHPS  420
KLGSFPPRSY STIQNLNFSS LESNALPLSW SNGVLGYGTQ AQPYNKNQNI GSLNFGRQLQ  480
EAHYQSYLQK NNSISNSSTQ QSLPAETLAA ATKAITSDPS FQSALAAALT SIIGPGTSST  540
ARVVGSQTAA DESGHNLKLI DQSFPILSSF PPSTSTVNKC ASTFLSSSNP PSSANSQPGS  600
LMFLSPSLSF PTPNNNSTSN VRLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	5e-56	WRKY family protein