PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121530.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 321aa MW: 35990.7 Da PI: 8.9707

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.1	2.8e-15	169	228	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027121530.1 169 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 228 57*****************666664477446***********************98 PP
2	AP2	24.9	4.9e-08	271	305	1	38
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 s+y+GV+++++ grW A+I + +k +lg+f XP_027121530.1 271 SQYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSK 305 78**************988532...5*****976 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MGSMNSNNWL SFPLSPTHSS IPAHLQTAQS HHFSLGLVNE NIDNPFQNQE WNLINTQGNS 60 EVPKVADFLG VGISENQSEI VSYSEIQAND SDYLFSNSSL VPVPNALAAA ASNNYELQES 120 GSSMQSLTLS MGSGKGSTCE TSASVDNSNS SIVDAAPRRT LDTFGQRTSI YRGVTRHRWT 180 GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGTS TTTNFPISNY 240 EKELEEMKHM TRQEFVASIR RKSSGFSRGA SQYRGVTRHH QHGRWQARIG RVAGNKDLYL 300 GTFSKQFQYN AKKCHDFQPM F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-158	AP2 family protein