PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121514.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 161aa MW: 17955.3 Da PI: 4.3816

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	79	6.7e-25	11	102	3	94
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c +e+++ti+++ +l al lGf dy+e++++ +++r+ XP_027121514.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSKEEKRTIAPEHVLKALEVLGFGDYIEEVHAAYEQHRNET 102 6899*****************************************************************************99999988755 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCSKEEKRTI APEHVLKALE VLGFGDYIEE VHAAYEQHRN ETMDTVRAGK WSNGAEMTEE 120 EALAEQQRMF AEARARMNGG AIVPPTVPKQ PDSEPEPSLN S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	3e-92	NF-YB family protein