PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121115.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 493aa MW: 51775.1 Da PI: 8.2593

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ XP_027121115.1 52 DQADCIYYLRTGLCGYGARCRFNHPR 77 6789********************96 PP
2	zf-CCCH	37.2	5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++rtG Ck+G++Ck++H++ XP_027121115.1 98 QPVCQFYMRTGNCKFGASCKYHHPR 122 689********************96 PP
3	zf-CCCH	34.3	4.1e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +Ck++H++ XP_027121115.1 143 GEKECSYYVKTGQCKYGVTCKYHHPQ 168 7899********************97 PP
4	zf-CCCH	36	1.2e-11	315	341	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++C+++H+p XP_027121115.1 315 PGQPECQYYMKYGDCKFGASCRYHHPP 341 5789*********************97 PP
5	zf-CCCH	33.9	5.4e-11	364	387	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++++G Ck+G++CkF H++ XP_027121115.1 364 AVCSHYLQNGVCKFGPSCKFDHPM 387 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MERYSGTQAM EGAATADPVA EWTAPSGETG LEEPMWQLGL GGGPEPYPER PDQADCIYYL 60 RTGLCGYGAR CRFNHPRDRT AAMGARATAG EYPERVGQPV CQFYMRTGNC KFGASCKYHH 120 PRQGSGSQTP VNLNFFGYPL RPGEKECSYY VKTGQCKYGV TCKYHHPQPA GVQMPAPAPG 180 PGPGPLPAPA TVPAPAIYPP VQSPSVQSSQ QYGVVPGNWP VPRPTLFPGS YIPGTYGPML 240 LPPGMVPLPA WTSYPTPASL AATASNQPAM GAGHIYGITQ LSPSAPAYTG QYLSIPPAAG 300 PSGSSQREHA FPERPGQPEC QYYMKYGDCK FGASCRYHHP PELSAQKANP VLSPMGLPLR 360 PGAAVCSHYL QNGVCKFGPS CKFDHPMGTL SYSPSASSLA DMPVAPYPVG SSMGTLAPSS 420 SSSDLRPELI SGSSKDAFSS RMSSVSASSG SVGSLFSKSS IVPHSSTQQP GQGTSTSSGS 480 SSTVHGSEVR TSS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MERYSGTQAM EGAATADPVA EWTAPSGETG LEEPMWQLGL GGGPEPYPER PDQADCIYYL  60
RTGLCGYGAR CRFNHPRDRT AAMGARATAG EYPERVGQPV CQFYMRTGNC KFGASCKYHH  120
PRQGSGSQTP VNLNFFGYPL RPGEKECSYY VKTGQCKYGV TCKYHHPQPA GVQMPAPAPG  180
PGPGPLPAPA TVPAPAIYPP VQSPSVQSSQ QYGVVPGNWP VPRPTLFPGS YIPGTYGPML  240
LPPGMVPLPA WTSYPTPASL AATASNQPAM GAGHIYGITQ LSPSAPAYTG QYLSIPPAAG  300
PSGSSQREHA FPERPGQPEC QYYMKYGDCK FGASCRYHHP PELSAQKANP VLSPMGLPLR  360
PGAAVCSHYL QNGVCKFGPS CKFDHPMGTL SYSPSASSLA DMPVAPYPVG SSMGTLAPSS  420
SSSDLRPELI SGSSKDAFSS RMSSVSASSG SVGSLFSKSS IVPHSSTQQP GQGTSTSSGS  480
SSTVHGSEVR TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-62	C3H family protein