PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121018.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 879aa MW: 99886.9 Da PI: 7.1029

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.8	7.1e-52	11	127	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k rwl+++ei+aiL n+++++++ ++ + p+sg+++L++rk++r+frkDG+swkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf r XP_027121018.1 11 EEaKGRWLRPNEIHAILCNYKHFNVQVKPVNLPPSGTIVLFDRKMLRNFRKDGHSWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVR 105 45599**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le++vlvhy+e++ XP_027121018.1 106 RCYWLLDKSLEHVVLVHYRETQ 127 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MKDLDIGNIL EEAKGRWLRP NEIHAILCNY KHFNVQVKPV NLPPSGTIVL FDRKMLRNFR 60 KDGHSWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN PTFVRRCYWL LDKSLEHVVL 120 VHYRETQEGS PSTPLNSNSS SALSDPSQSL VISEESDSAA DRAYYSRERA DLDPNCSVNI 180 KDHELRLHEI NTLEWDELLV QDDPNKLIGP QEGKYSSELS YQYDMNGYGI TGDSISDNKL 240 PVESYLEKFP GQVSMNNSGN LNVPANLCFQ TMGAPTANLL LKDSEQMTLF AGDSLEHASK 300 DGLQTQDSFG KWISNVIADS PLPLDDTKIF NITEISPSWA LSSEETKILV VGYFHEGQSN 360 LAKSNLFCIC GNACTRAEPV QSGVFRCVVS PQAPAFVNLF LSFDGHTPIS QVVMFEFRGP 420 IVDNPAISEE RSSWEEFEVQ MRLAHLLFST SRSFNILSTK VTPTALKEAK NFARKTSHIK 480 NHWEFLTKSI KAKEISFPDA KNCLFELTLQ NRLLEWLLER VAEGCQISER DEQGLGVIHL 540 CAILGYTWAV YPFSWSGLSI DYRDKFGWTA LHWAAYYGRE PMVAKLLTAG AKANLVTDPT 600 SENPGGFTAA DLASKNGHEG LGAYLAEKAL VQHFQDMTLA GNVSGSLHTA KSDSVEPGNF 660 SEDELYLKDT LAAYRTAADA AARIQAAFRE HSLKVQTLAV ESSNPEIEAR NIVAAMKIQH 720 AFRNFETRKK MAAAARIQHR FRTWKMRRDF LNMRRQAIRI QAVFRGFQVR KQYRKIIWSV 780 GVLEKAILRW RLKRKGFRGL HVNPDEVVNN QKEENDVEED FFRASRKQAE ERVERSVVRV 840 QAMFRSKLAQ EEYRRMKLAH NNAAREYEEF ENPDGMRQD

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MKDLDIGNIL EEAKGRWLRP NEIHAILCNY KHFNVQVKPV NLPPSGTIVL FDRKMLRNFR  60
KDGHSWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN PTFVRRCYWL LDKSLEHVVL  120
VHYRETQEGS PSTPLNSNSS SALSDPSQSL VISEESDSAA DRAYYSRERA DLDPNCSVNI  180
KDHELRLHEI NTLEWDELLV QDDPNKLIGP QEGKYSSELS YQYDMNGYGI TGDSISDNKL  240
PVESYLEKFP GQVSMNNSGN LNVPANLCFQ TMGAPTANLL LKDSEQMTLF AGDSLEHASK  300
DGLQTQDSFG KWISNVIADS PLPLDDTKIF NITEISPSWA LSSEETKILV VGYFHEGQSN  360
LAKSNLFCIC GNACTRAEPV QSGVFRCVVS PQAPAFVNLF LSFDGHTPIS QVVMFEFRGP  420
IVDNPAISEE RSSWEEFEVQ MRLAHLLFST SRSFNILSTK VTPTALKEAK NFARKTSHIK  480
NHWEFLTKSI KAKEISFPDA KNCLFELTLQ NRLLEWLLER VAEGCQISER DEQGLGVIHL  540
CAILGYTWAV YPFSWSGLSI DYRDKFGWTA LHWAAYYGRE PMVAKLLTAG AKANLVTDPT  600
SENPGGFTAA DLASKNGHEG LGAYLAEKAL VQHFQDMTLA GNVSGSLHTA KSDSVEPGNF  660
SEDELYLKDT LAAYRTAADA AARIQAAFRE HSLKVQTLAV ESSNPEIEAR NIVAAMKIQH  720
AFRNFETRKK MAAAARIQHR FRTWKMRRDF LNMRRQAIRI QAVFRGFQVR KQYRKIIWSV  780
GVLEKAILRW RLKRKGFRGL HVNPDEVVNN QKEENDVEED FFRASRKQAE ERVERSVVRV  840
QAMFRSKLAQ EEYRRMKLAH NNAAREYEEF ENPDGMRQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein