PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027120939.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 1031aa MW: 114529 Da PI: 7.0437

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027120939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.7e-40	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_027120939.1 153 VCQVEDCRADLSNAKDYHRRHKVCDVHSKATRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 230 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence
MEAEIGGKAY HYYGPVVSDL KAVGKRSVEW DLNDWKWDGD LFTAAPLNSL PSDCRSRQFF 60 PIGSEIPTNS LVSNSVSSGS DEMFVGSDKG KRELEKRRRG VDGEDEELTD EAGSLHLKLG 120 GHVYPITEGD ADKWEGKSGK KTKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDVHS 180 KATRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTHP ESVESGTPAT 240 DERGSNYLLI SLLRILSNIH SNNSSDQTKD QDLLSHLLRS LAGLAGIVNE KNLTGLLPGS 300 QDLQNAGTSD GNPAKVSNLV LQNAEFXPCT GALLSSDCFN LQDTSRNMLQ YSTMPASESA 360 QKRILGDDDN GIVRISSPAQ STLLLPPKEG ILTKASSLGT TIGKTRMNNI DLNNAYDDSQ 420 DCIENLQSSD CPTHIGKASS GCPLWVYQDP YKSSPPQPSG NSGSTSTQSP SSSSGEAQSR 480 TDRIVFKLFG KDPSDFPLAL RKQILDWLSH SPSDIESYIR PGCVILTIYI RMDKSTWEEL 540 CYDLTSSLRR LLDASTDSFW KSGWIYARVR HRVAFVYDGC IVLDTPLPHK SQKSCRILNI 600 KPIAVCASGE VKFSVRGINL SQPTTRLLCA LEGKYLAQER CADVIGGADL YIEHAEIQTL 660 NFTCTVPDVT GRGFIEVEDH GLSSSFFPFI VAENDVCSEI STLESIIEAA EISNGLHGNN 720 QNLEARNQAL DFIHEIGWLL HRSQLKFRLG QQDPNLDTFP FQRFRWLIEF SVEHDWCAVV 780 KMLLNVLFNK LMGEEKRSSI EDALLDIGLL HRAVRRNCRS MVEVLLRYHP DADLNKLSAI 840 RYVFRPDVKG PGGLTPLHIA AGRDGAEHVL DALTDDPGLV GVEAWRSARD STGLTPNDYA 900 CLRGHYSYIH LVQKKINKKW GSQHVVLEIP DGHLQSSMNQ KTADENKSRK VSSLSTEMSV 960 VKPSHVHCRQ CEQKLAYGRN RTSLAIYRPA MLSMVAIAAV CVCVALLFKS SPEVDYVYGP 1020 FRWEYLEYGS S

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence

MEAEIGGKAY HYYGPVVSDL KAVGKRSVEW DLNDWKWDGD LFTAAPLNSL PSDCRSRQFF  60
PIGSEIPTNS LVSNSVSSGS DEMFVGSDKG KRELEKRRRG VDGEDEELTD EAGSLHLKLG  120
GHVYPITEGD ADKWEGKSGK KTKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDVHS  180
KATRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTHP ESVESGTPAT  240
DERGSNYLLI SLLRILSNIH SNNSSDQTKD QDLLSHLLRS LAGLAGIVNE KNLTGLLPGS  300
QDLQNAGTSD GNPAKVSNLV LQNAEFXPCT GALLSSDCFN LQDTSRNMLQ YSTMPASESA  360
QKRILGDDDN GIVRISSPAQ STLLLPPKEG ILTKASSLGT TIGKTRMNNI DLNNAYDDSQ  420
DCIENLQSSD CPTHIGKASS GCPLWVYQDP YKSSPPQPSG NSGSTSTQSP SSSSGEAQSR  480
TDRIVFKLFG KDPSDFPLAL RKQILDWLSH SPSDIESYIR PGCVILTIYI RMDKSTWEEL  540
CYDLTSSLRR LLDASTDSFW KSGWIYARVR HRVAFVYDGC IVLDTPLPHK SQKSCRILNI  600
KPIAVCASGE VKFSVRGINL SQPTTRLLCA LEGKYLAQER CADVIGGADL YIEHAEIQTL  660
NFTCTVPDVT GRGFIEVEDH GLSSSFFPFI VAENDVCSEI STLESIIEAA EISNGLHGNN  720
QNLEARNQAL DFIHEIGWLL HRSQLKFRLG QQDPNLDTFP FQRFRWLIEF SVEHDWCAVV  780
KMLLNVLFNK LMGEEKRSSI EDALLDIGLL HRAVRRNCRS MVEVLLRYHP DADLNKLSAI  840
RYVFRPDVKG PGGLTPLHIA AGRDGAEHVL DALTDDPGLV GVEAWRSARD STGLTPNDYA  900
CLRGHYSYIH LVQKKINKKW GSQHVVLEIP DGHLQSSMNQ KTADENKSRK VSSLSTEMSV  960
VKPSHVHCRQ CEQKLAYGRN RTSLAIYRPA MLSMVAIAAV CVCVALLFKS SPEVDYVYGP  1020
FRWEYLEYGS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein