PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027120199.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 444aa MW: 48139.9 Da PI: 6.9438

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027120199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.7e-33	242	300	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ dp++v++tYeg+H h+ XP_027120199.1 242 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSPSCGVKKRVERSSGDPTTVVTTYEGTHMHP 300 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIGSAPMAS SPPPSYGGGG 60 GGAAHPHDHD MVKMESFGFI DMLTVPDYPC PSIYEMVFQQ LPPMKFQSPP LSQPLLQPQS 120 PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS SDAQNDDQQQ NKTPVEGEQE 180 DRDQDKTKKQ CCFSYNFFFN HQKVIFSPLP FSGISLKPKK KNQKGQKEPR FAFMTKSEVD 240 HLDDGYRWRK YGQKAVKNSP FPRSYYRCTS PSCGVKKRVE RSSGDPTTVV TTYEGTHMHP 300 TPLTSRGSLG LVAESSASFI CGPSGVGSSN GGGGAGEAVT IGAGFGGAGS GSGPGPSSFF 360 PPPMSQYHHQ QPQQFQQQQL QQLPFFRVPT APASLNFNTH SSSFAHMIVQ ESSYCPPPPS 420 SFVDNGLLED IVPSEMLIKE PKKE

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIGSAPMAS SPPPSYGGGG  60
GGAAHPHDHD MVKMESFGFI DMLTVPDYPC PSIYEMVFQQ LPPMKFQSPP LSQPLLQPQS  120
PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS SDAQNDDQQQ NKTPVEGEQE  180
DRDQDKTKKQ CCFSYNFFFN HQKVIFSPLP FSGISLKPKK KNQKGQKEPR FAFMTKSEVD  240
HLDDGYRWRK YGQKAVKNSP FPRSYYRCTS PSCGVKKRVE RSSGDPTTVV TTYEGTHMHP  300
TPLTSRGSLG LVAESSASFI CGPSGVGSSN GGGGAGEAVT IGAGFGGAGS GSGPGPSSFF  360
PPPMSQYHHQ QPQQFQQQQL QQLPFFRVPT APASLNFNTH SSSFAHMIVQ ESSYCPPPPS  420
SFVDNGLLED IVPSEMLIKE PKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-41	WRKY family protein