PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027120002.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 446aa MW: 50768.6 Da PI: 6.9942

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027120002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.7e-21	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+t++ trtgC a+++vk + + k++vt++ eHnH+la XP_027120002.1 86 EFYNLYAKLSGFGIRKSNAKQD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKRETKPITRTGCGARFRVKYDIeSVKYVVTRFIMEHNHPLA 176 6*************987766.9999999********998876789999*************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MGQDGALKTH DMVQETENGK MGMDGCSRLR SFDLNQEPEC DRDTFIEEIG GSIGGHEDEE 60 ADELVGAIGM DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKQDADG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKRETK PITRTGCGAR FRVKYDIESV KYVVTRFIME HNHPLASEAS 180 VQHIRWHRKV NDAEYAQAKS LKLAGTRICQ IMKHFVIKPG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRA DFSVFGDVLV 300 FDTTYKTNKY RKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV ETMKGRRPVA 360 VMTKCMLLGS CSFLLPPLRE TCEHKESPLT RISCKSILAS PLTYHNPPSN LFRVHHISSN 420 NMYDSLHPRS SPQKLEVLAC SNASSP

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MGQDGALKTH DMVQETENGK MGMDGCSRLR SFDLNQEPEC DRDTFIEEIG GSIGGHEDEE  60
ADELVGAIGM DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKQDADG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKRETK PITRTGCGAR FRVKYDIESV KYVVTRFIME HNHPLASEAS  180
VQHIRWHRKV NDAEYAQAKS LKLAGTRICQ IMKHFVIKPG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRA DFSVFGDVLV  300
FDTTYKTNKY RKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV ETMKGRRPVA  360
VMTKCMLLGS CSFLLPPLRE TCEHKESPLT RISCKSILAS PLTYHNPPSN LFRVHHISSN  420
NMYDSLHPRS SPQKLEVLAC SNASSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-48	FAR1 family protein