PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119780.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 431aa MW: 46573.2 Da PI: 8.2185

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_027119780.1 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 79****************************************************8 PP
2	Myb_DNA-binding	72.2	8.1e-23	36	87	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_027119780.1 36 RLRWTVELHERFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 87 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MFHTKKPASA MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VTQLGGPDKA 60 TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFSDHP IKDASTLELQ RSSSASSSGM 120 IGRSMNEMQM EVQRRLHEQL EVQRHLQLRI EAQGKYMQTI LEKACQTLAG ENMASAAAAG 180 SYNKGGNQAG GGVVDIKEFG PPLSFPSLQD LNIYGSGEQL ELQQGGMVVD RSPSLDGFMS 240 NNNDTQLCHL GKKRPTPPSP YGGGSGKSPA SLMWSDHHHH HHHDLRLQEL GSAAASCLGN 300 SQDHHHHHDP FKGDHHHQIQ MNNAPGGAGV LSLERSNVDV VIDSMSDSTC SNMYETKPLI 360 SGSCGSDGGM VLGGTDQKNA SSKLERPSPR RASTTATTPP PSSSSDHRMN PVQIGTGAAG 420 AMSQARNSPF G

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MFHTKKPASA MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VTQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFSDHP IKDASTLELQ RSSSASSSGM  120
IGRSMNEMQM EVQRRLHEQL EVQRHLQLRI EAQGKYMQTI LEKACQTLAG ENMASAAAAG  180
SYNKGGNQAG GGVVDIKEFG PPLSFPSLQD LNIYGSGEQL ELQQGGMVVD RSPSLDGFMS  240
NNNDTQLCHL GKKRPTPPSP YGGGSGKSPA SLMWSDHHHH HHHDLRLQEL GSAAASCLGN  300
SQDHHHHHDP FKGDHHHQIQ MNNAPGGAGV LSLERSNVDV VIDSMSDSTC SNMYETKPLI  360
SGSCGSDGGM VLGGTDQKNA SSKLERPSPR RASTTATTPP PSSSSDHRMN PVQIGTGAAG  420
AMSQARNSPF G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-94	G2-like family protein