PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119772.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 520aa MW: 56223.4 Da PI: 8.0693

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.5e-11	144	168	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027119772.1 144 GEKDCAYYMLTRTCKYGDSCKFDHP 168 7889********************8 PP
2	zf-CCCH	37	5.8e-12	195	220	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027119772.1 195 PGEPDCPFFMKTQRCKFGTRCKFNHP 220 5789*********************8 PP
3	zf-CCCH	39.4	9.9e-13	243	267	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027119772.1 243 EPPCAFYMKTGQCKFGATCKFHHPK 267 79*********************96 PP
4	zf-CCCH	34.2	4.3e-11	319	342	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027119772.1 319 EVDCPFYLKTGSCKYGQTCRYNHP 342 689********************9 PP
5	zf-CCCH	36.7	7.2e-12	405	429	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G rCkF+H+ XP_027119772.1 405 GETACDFYMKTGDCKFGQRCKFHHP 429 6789********************8 PP
6	zf-CCCH	36.6	7.7e-12	463	484	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027119772.1 463 CPYYMKTGTCKYGATCRFDHPP 484 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MANQMYRFNF SSNYGGGGEA AAANLYNTNS SRSMVADSFL SSSDTSSLLG SSRIPGLDAV 60 SPTTTSKPAS SSSSWPGPPG VDIADPFILA TLKRSSSQAL YHQTVFGAHN PIGQTEAWFS 120 TNPLAKRPRF ESAGNLPIYP QRPGEKDCAY YMLTRTCKYG DSCKFDHPIW VPEGGIPDWK 180 EVPLVDTSEP LPERPGEPDC PFFMKTQRCK FGTRCKFNHP IEKITPLVAL ETNSAVLPER 240 PSEPPCAFYM KTGQCKFGAT CKFHHPKDLQ ISTAGQENSF GEQSKLSTNE TSGDFKAVKP 300 PVTPAMMHNT KGLPIRLGEV DCPFYLKTGS CKYGQTCRYN HPDRNGISAI NPPAAAIGAA 360 YIASPAPNLS IGIVNPAASI LQTFDPRLTQ TTVGLAAAIY PQRPGETACD FYMKTGDCKF 420 GQRCKFHHPI DRSAPIISGK ETQQENVKLT RAGLPRREGA IHCPYYMKTG TCKYGATCRF 480 DHPPPGEVLA MGTTAQGTWS PTGGEAEEGS SGPETGGEKQ

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MANQMYRFNF SSNYGGGGEA AAANLYNTNS SRSMVADSFL SSSDTSSLLG SSRIPGLDAV  60
SPTTTSKPAS SSSSWPGPPG VDIADPFILA TLKRSSSQAL YHQTVFGAHN PIGQTEAWFS  120
TNPLAKRPRF ESAGNLPIYP QRPGEKDCAY YMLTRTCKYG DSCKFDHPIW VPEGGIPDWK  180
EVPLVDTSEP LPERPGEPDC PFFMKTQRCK FGTRCKFNHP IEKITPLVAL ETNSAVLPER  240
PSEPPCAFYM KTGQCKFGAT CKFHHPKDLQ ISTAGQENSF GEQSKLSTNE TSGDFKAVKP  300
PVTPAMMHNT KGLPIRLGEV DCPFYLKTGS CKYGQTCRYN HPDRNGISAI NPPAAAIGAA  360
YIASPAPNLS IGIVNPAASI LQTFDPRLTQ TTVGLAAAIY PQRPGETACD FYMKTGDCKF  420
GQRCKFHHPI DRSAPIISGK ETQQENVKLT RAGLPRREGA IHCPYYMKTG TCKYGATCRF  480
DHPPPGEVLA MGTTAQGTWS PTGGEAEEGS SGPETGGEKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-177	C3H family protein