PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027119771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 534aa MW: 58058.3 Da PI: 8.0701 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 170 | 194 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027119771.1 170 GEKDCAYYMLTRTCKYGDSCKFDHP 194 7889********************8 PP | |||||||
2 | zf-CCCH | 36.9 | 6e-12 | 221 | 246 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027119771.1 221 PGEPDCPFFMKTQRCKFGTRCKFNHP 246 5789*********************8 PP | |||||||
3 | zf-CCCH | 39.4 | 1e-12 | 269 | 293 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027119771.1 269 EPPCAFYMKTGQCKFGATCKFHHPK 293 79*********************96 PP | |||||||
4 | zf-CCCH | 34.2 | 4.4e-11 | 345 | 368 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027119771.1 345 EVDCPFYLKTGSCKYGQTCRYNHP 368 689********************9 PP | |||||||
5 | zf-CCCH | 36.6 | 7.4e-12 | 419 | 443 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G rCkF+H+ XP_027119771.1 419 GETACDFYMKTGDCKFGQRCKFHHP 443 6789********************8 PP | |||||||
6 | zf-CCCH | 36.5 | 7.9e-12 | 477 | 498 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027119771.1 477 CPYYMKTGTCKYGATCRFDHPP 498 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence |
MANQMYRFNF SSNYGGGGEA AAANLYNTNS SRSMVADSFL SSSDTSSLLG SSRYLTSSDP 60 LFSSSAARLF SHSDSYSFRI PGLDAVSPTT TSKPASSSSS WPGPPGVDIA DPFILATLKR 120 SSSQALYHQT VFGAHNPIGQ TEAWFSTNPL AKRPRFESAG NLPIYPQRPG EKDCAYYMLT 180 RTCKYGDSCK FDHPIWVPEG GIPDWKEVPL VDTSEPLPER PGEPDCPFFM KTQRCKFGTR 240 CKFNHPIEKI TPLVALETNS AVLPERPSEP PCAFYMKTGQ CKFGATCKFH HPKDLQISTA 300 GQENSFGEQS KLSTNETSGD FKAVKPPVTP AMMHNTKGLP IRLGEVDCPF YLKTGSCKYG 360 QTCRYNHPDR NGAAYIASPA PNLSIGIVNP AASILQTFDP RLTQTTVGLA AAIYPQRPGE 420 TACDFYMKTG DCKFGQRCKF HHPIDRSAPI ISGKETQQEN VKLTRAGLPR REGAIHCPYY 480 MKTGTCKYGA TCRFDHPPPG EVLAMGTTAQ GTWSPTGGEA EEGSSGPETG GEKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-179 | C3H family protein |