PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027119637.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 432aa    MW: 48933.3 Da    PI: 5.056
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027119637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.86.1e-95604313374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s++++yk+l++ ++++++ + + +    f+evsP+ +f+h++
  XP_027119637.1  60 RLLRECATAISDKDSTKIRHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLASVAEKSHSFDAARKLILKFQEVSPWTTFGHVA 154
                     7899**********************************************************9999985554444444444************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea++ge+++Hi+D++ + ++QWp+Ll+aLa+R++++p+l++T+v   +s  k  ++e+++r++kfA+ +gvpfefn++   ++l  l+ 
  XP_027119637.1 155 SNGAILEALDGENKLHIVDISNTLCTQWPTLLEALATRNDETPHLKLTVVIT-ASIAKPVMKEIAQRMEKFARLMGVPFEFNLIsGLSHLGGLTK 248
                     **************************************************99.6679**************************855569999*** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     ++L+++ +Ea+a+n++ +l r+      +e+ r++v+++++s +P++v+vve+ead   ++++F++ f e+l++ +  f++le+++p++s+er +
  XP_027119637.1 249 QNLNIQDDEAIAINCIGALRRVQ-----VEE-RTAVIHMFQSFQPRIVTVVEEEADFtsSKNDFVKCFEECLRFTTLYFEMLEESFPPTSNERLM 337
                     *********************97.....444.89********************999545669******************************** PP

            GRAS 285 vErellgreivnvvace...gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSa 372
                     +Ere  +r+iv v+ac    g+  re +e+ ++W erl+ea F+pv++s+++++++k+ll+++   g++++    +++  ++l Wk++p+v++Sa
  XP_027119637.1 338 LERE-CSRSIVRVLACDdeiGEGDRECRERGSQWTERLREA-FSPVSYSDDVVDDVKALLKRYR-TGWSLQpqqaDHESGIYLAWKEEPVVWASA 429
                     ****.89*********83333447888999*********98.**********************.88888865644466677************* PP

            GRAS 373 Wr 374
                     W+
  XP_027119637.1 430 WK 431
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MDISFFSPPE TTTFFHKNPQ KNDPYLDMQS TNNQPQSSHT STSISSDSGE PCGDGKWASR  60
LLRECATAIS DKDSTKIRHL LWMLNELASP YGDCDQKLAS YFLQALFCKA TESGQRCYKT  120
LASVAEKSHS FDAARKLILK FQEVSPWTTF GHVASNGAIL EALDGENKLH IVDISNTLCT  180
QWPTLLEALA TRNDETPHLK LTVVITASIA KPVMKEIAQR MEKFARLMGV PFEFNLISGL  240
SHLGGLTKQN LNIQDDEAIA INCIGALRRV QVEERTAVIH MFQSFQPRIV TVVEEEADFT  300
SSKNDFVKCF EECLRFTTLY FEMLEESFPP TSNERLMLER ECSRSIVRVL ACDDEIGEGD  360
RECRERGSQW TERLREAFSP VSYSDDVVDD VKALLKRYRT GWSLQPQQAD HESGIYLAWK  420
EEPVVWASAW KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-138GRAS family protein