PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027119627.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 222aa    MW: 24884.9 Da    PI: 9.7408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027119627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.3e-1170116755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++Er+RR ++ ++++ L +l+P+++  p +K+s   +L+++++YI+sL+
  XP_027119627.1  70 QNERNRRGKMAESYSVLLSLVPSLF--PIPKPSRERTLTETINYIRSLE 116
                     58*********************76..********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MIAKEKGRKR VSEEEEIGKL FIGIMEGYKD SLIPPLSEFN PAIERTNCEK GSSSSKKRDR  60
TEASEIKSVQ NERNRRGKMA ESYSVLLSLV PSLFPIPKPS RERTLTETIN YIRSLEQEKE  120
RLEGLKSSLL QKPVLSGCTT YLMNPSVTAS LCNGVAFFGI QLPAKRGLLR KIAKAFEKYH  180
AEVLEVTIFV NDHGMLTLTG TFMVGNDGAF VVEKIKKEIL IL