PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119320.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 396aa MW: 42695.5 Da PI: 9.0654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6.1e-11	303	348	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq XP_027119320.1 303 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 348 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MYPSSTSSSS QGSMGPNGGS STGGLIRYGS APSSLLATAA DSVTNPSSRE FSALGSSHNL 60 HMGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI 120 IGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNGF PIARTHDISR 180 LNSQLSFTHQ ETLSQISEET ENVDNGLNAE NEKRKSAHTY SNVSYGVGPW EDANTIMFSM 240 GPTSKRAKNM SGDIVNLNSM ETQFGMPQTM LDMSSMDKLL NIPQDSVPCK IRAKRGCATH 300 PRSIAERERR TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKGLQNQ VQRLHKELDN 360 CTCGCRKHKI LVEEERAEAR TVKLDRKIFV GNARHI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MYPSSTSSSS QGSMGPNGGS STGGLIRYGS APSSLLATAA DSVTNPSSRE FSALGSSHNL  60
HMGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI  120
IGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNGF PIARTHDISR  180
LNSQLSFTHQ ETLSQISEET ENVDNGLNAE NEKRKSAHTY SNVSYGVGPW EDANTIMFSM  240
GPTSKRAKNM SGDIVNLNSM ETQFGMPQTM LDMSSMDKLL NIPQDSVPCK IRAKRGCATH  300
PRSIAERERR TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKGLQNQ VQRLHKELDN  360
CTCGCRKHKI LVEEERAEAR TVKLDRKIFV GNARHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	8e-66	bHLH family protein