PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119119.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 488aa MW: 54183.1 Da PI: 5.3675

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.8	1.9e-34	23	113	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+++++++ ws++ +sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+kk+ll++ XP_027119119.1 23 FLLKTYDMVDDSSTDDIVAWSSTRKSFIVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDKKHLLKN 108 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_027119119.1 109 IHRRK 113 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MEAAAAGLIS APGGGGGAGP APFLLKTYDM VDDSSTDDIV AWSSTRKSFI VWNPPEFARL 60 LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DKKHLLKNIH RRKPIHSHSN 120 PQGTVVDPER TAFEEEIDKL SREKAVLEGN VLRFKQQQST AKVQLEDLTQ RLSGMEKRQD 180 NLLTFLENAV QKPCFVEILS QKLESMDVSA YNKKRRLPQV DQTQYVQENM MVDDHSSSRP 240 EFGNNSIPQD FCNKLTLELS PAVSDINLLS HSTQSSNEDG EISPKRISEG WPKDVQKCGE 300 TLYAPETLDL SDTGTSFGLK VDSPLPHKAA DAESPQLHSF QPCLTSSEDG DGHISCHLNL 360 SLASSASPIG RSQSSAKVDH VVEETGKSSE ANLNADGNEA DLSIPMESRK HPDGDTTLSS 420 SQNKQQGPAT QARVNDVFWE QFLTEKPGSM DNEEAGSNHR ASPHDEQENR KLGRGLPRSI 480 KSAEHLSL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MEAAAAGLIS APGGGGGAGP APFLLKTYDM VDDSSTDDIV AWSSTRKSFI VWNPPEFARL  60
LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DKKHLLKNIH RRKPIHSHSN  120
PQGTVVDPER TAFEEEIDKL SREKAVLEGN VLRFKQQQST AKVQLEDLTQ RLSGMEKRQD  180
NLLTFLENAV QKPCFVEILS QKLESMDVSA YNKKRRLPQV DQTQYVQENM MVDDHSSSRP  240
EFGNNSIPQD FCNKLTLELS PAVSDINLLS HSTQSSNEDG EISPKRISEG WPKDVQKCGE  300
TLYAPETLDL SDTGTSFGLK VDSPLPHKAA DAESPQLHSF QPCLTSSEDG DGHISCHLNL  360
SLASSASPIG RSQSSAKVDH VVEETGKSSE ANLNADGNEA DLSIPMESRK HPDGDTTLSS  420
SQNKQQGPAT QARVNDVFWE QFLTEKPGSM DNEEAGSNHR ASPHDEQENR KLGRGLPRSI  480
KSAEHLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-156	HSF family protein