PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119012.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 447aa MW: 50722.4 Da PI: 5.6157

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	240	291	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_027119012.1 240 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 291 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEKEENYSVR KIQENLYLHC LLYCIFLLTH HYMTMLFFFQ PEMLQGSIPG NFTGLDYTLE 60 HHQQNQHPQL MKPQIGEASG DDGSNQMVDY MLHNTAQQQP MSSGFCGSTS LDKLSFADVM 120 QFADFGPKLA LNQAKTPEEE TVLNDSVYFL KFPVLNEKLQ DDPDHQALMI PRPINEESNS 180 KVGEEGDQRP DQDQARGFGN TSVQLQFLGD NREKSPLTTE TKNKKKRSRT IKSSEEVESQ 240 RMTHIAVERN RRKQMNEHLR VLRSLMPGSY VQRGDQASII GGAIEFVREL EQLLQCLESQ 300 KRRRLYGDGP RPIGDSSSSI PIQQPQPPFF PGMPLSSDQM KLVELETGLH EETAESKSCL 360 ADVEVKLLGF DALIKILSRR RPGQLIKTIA ALEDLQLNIL HTNITTIEQT VLYSFNVKVA 420 SEARFTAEDI ANSIQQIFSF IHANSSI

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEKEENYSVR KIQENLYLHC LLYCIFLLTH HYMTMLFFFQ PEMLQGSIPG NFTGLDYTLE  60
HHQQNQHPQL MKPQIGEASG DDGSNQMVDY MLHNTAQQQP MSSGFCGSTS LDKLSFADVM  120
QFADFGPKLA LNQAKTPEEE TVLNDSVYFL KFPVLNEKLQ DDPDHQALMI PRPINEESNS  180
KVGEEGDQRP DQDQARGFGN TSVQLQFLGD NREKSPLTTE TKNKKKRSRT IKSSEEVESQ  240
RMTHIAVERN RRKQMNEHLR VLRSLMPGSY VQRGDQASII GGAIEFVREL EQLLQCLESQ  300
KRRRLYGDGP RPIGDSSSSI PIQQPQPPFF PGMPLSSDQM KLVELETGLH EETAESKSCL  360
ADVEVKLLGF DALIKILSRR RPGQLIKTIA ALEDLQLNIL HTNITTIEQT VLYSFNVKVA  420
SEARFTAEDI ANSIQQIFSF IHANSSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	252	RMTHIAVERNRR
2	301	305	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-132	bHLH family protein