PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118173.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 284aa    MW: 32325.4 Da    PI: 5.2539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118173.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1762.8e-54427542317
            GRAS  42 aayfteALaarlarsvselykal.ppsetseknsseelaalkl.......fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                       yf  AL++r++r++  ++    + s+  ++ ++  +    +        ++  P+ +++++ta qa ++ ++ ++rvHi+D++i+   +Wp +
  XP_027118173.1   4 CYYFSAALQERISRETGVVVPEAsEGSQRMPTLEKAFT----TlqpavveCQQELPFCQVTQFTAIQATVDNLAAAKRVHIVDLGIKSRSHWPII 94 
                     67************444443333122222222222222....2123456688999**************************************** PP

            GRAS 129 lqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                     +q  a R+  +   l+iT+ g+    +ke++ee+g+ L+ fAe+++ pf+f++ +++++ dl+ + +++ ++E+laV + ++l +ll+++ +les
  XP_027118173.1  95 MQVHAGRQeCQLELLKITAGGP----HKERIEEIGKMLSFFAETINEPFKFKL-IVSEMRDLKKDFFELAEHEVLAVYSEMRLASLLASPDNLES 184
                     *******9455679********....9*************************9.7999*****************************99999999 PP

            GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                         ++ ++ +l+P v+v++e ea++n+++Fl+rf  al+ ++a+f++ e  + r+++ r+ +E +++ + i+n++++eg+er++r+e+le Wr+
  XP_027118173.1 185 ----LVGTIAKLKPCVMVMIEIEASTNTPNFLDRFDAALHLCAAVFNCHEDCMERKNSCRALLEGVFIWEGIQNIITTEGEERIHRQEKLEFWRA 275
                     ....*****************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MTICYYFSAA LQERISRETG VVVPEASEGS QRMPTLEKAF TTLQPAVVEC QQELPFCQVT  60
QFTAIQATVD NLAAAKRVHI VDLGIKSRSH WPIIMQVHAG RQECQLELLK ITAGGPHKER  120
IEEIGKMLSF FAETINEPFK FKLIVSEMRD LKKDFFELAE HEVLAVYSEM RLASLLASPD  180
NLESLVGTIA KLKPCVMVMI EIEASTNTPN FLDRFDAALH LCAAVFNCHE DCMERKNSCR  240
ALLEGVFIWE GIQNIITTEG EERIHRQEKL EFWRAYWQDL ASLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-38GRAS family protein