PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118152.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 150aa    MW: 16909.8 Da    PI: 4.9303
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1702.7e-5317112297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvtseas+kc++e+rkt+ngdd++w+l+tlGf+dy+ plk yl +yreleg+
  XP_027118152.1  17 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTSEASEKCRKERRKTVNGDDICWSLGTLGFDDYAGPLKRYLDRYRELEGD 111
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  XP_027118152.1 112 R 112
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MVDNLGASAS SEEGGIKEQD RLLPIANVGR IMKQILPPNA KISKEAKETM QECVSEFIGF  60
VTSEASEKCR KERRKTVNGD DICWSLGTLG FDDYAGPLKR YLDRYRELEG DRSGNQDKVS  120
NSAEEMEEPS SYRSNIVQPR NQAEPSYRRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-58NF-YB family protein