PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118132.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 595aa    MW: 67182.8 Da    PI: 6.4625
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.42.4e-892225931374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaalkl.......fsev 87 
                     lv+ Ll+ Ae v ++++e+a +lL +  +l+s++g++++Rl+ yf  AL++r+ r++ ++  k l   ++      + l  ++         ++ 
  XP_027118132.1 222 LVQYLLASAELVGKKQFERAGKLLLECDKLSSNQGNAIERLVYYFSGALHERIDRETGTVTpKGLGKMQS-----LDMLDTMSGitpdiiaMQKS 311
                     6899***************************************************443333033322222.....22222221112233469*** PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      P+ ++s+++  q Il+ v+ ++++Hi+D++i  G+Q+  L+qaLa+R+ ++   l++T++g    +sk ++eetg+rLa+fA++ +++f+ n++
  XP_027118132.1 312 VPFSQVSQFAGAQGILDHVADATKIHIVDLEIRTGMQYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRRLASFARAWNLKFSLNIV 403
                     *************************************************455569********...689************************** PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     ++ ++ dl+ + +++  +Ea+aV + + l  + +++  les    ++++vk ++P+v++v+e e +hns+ F++rf+eal yy a++dsle  l 
  XP_027118132.1 404 MVADIMDLNENLFEIYADEAVAVWVEYYLTFMIRRQDILES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFYYGAFYDSLEDCLK 494
                     ***************************99999977766666....************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                     ++s++r++vE ++++++i+n+va+eg+er+ rh  ++ W++ + ++G+ +v+ls + + qa+lll++++ +   ++  + + l++gWk+ p+ s+
  XP_027118132.1 495 HDSKNRMFVESVYFSQAIRNIVATEGEERTIRHVAVNVWKAFFARFGMVQVELSMSSMYQANLLLKNFDcGSSCTLAMDGKGLIIGWKGTPIHSL 589
                     *********************************************************************9999********************** PP

            GRAS 371 SaWr 374
                     SaW+
  XP_027118132.1 590 SAWK 593
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    
MEMFHFDHFD FLGVSGKYGS TKGFQFEDHA KEEKRNHLIT NNDHDWEASR GIGSFYPGAP  60
GSNQVHCNTA DGVIFSKLHQ EQQLKQLSGF ACFNDLYFDM EIPPFQSCEE AIKKLVDDVA  120
FEGSEPNDAK KERPYAGPLQ ILKNYRKRFR KLNVEKTDFP SYLGCTFITS QKLSTDAILK  180
LAAQNFIRSS SEGTSSEFFV LNHPYASSFV GLGEEDIKGV QLVQYLLASA ELVGKKQFER  240
AGKLLLECDK LSSNQGNAIE RLVYYFSGAL HERIDRETGT VTPKGLGKMQ SLDMLDTMSG  300
ITPDIIAMQK SVPFSQVSQF AGAQGILDHV ADATKIHIVD LEIRTGMQYT ILMQALATRS  360
QNPLEYLKVT AIGTKSKAKI EETGRRLASF ARAWNLKFSL NIVMVADIMD LNENLFEIYA  420
DEAVAVWVEY YLTFMIRRQD ILESLMNVVK AINPRVMIVT EVEGNHNSPV FVTRFIEALF  480
YYGAFYDSLE DCLKHDSKNR MFVESVYFSQ AIRNIVATEG EERTIRHVAV NVWKAFFARF  540
GMVQVELSMS SMYQANLLLK NFDCGSSCTL AMDGKGLIIG WKGTPIHSLS AWKFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-59GRAS family protein