PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027118103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 361aa MW: 40251 Da PI: 6.9032 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 239.6 | 1.3e-73 | 28 | 360 | 40 | 374 |
GRAS 40 RlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsev...sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129 ++a+ + AL+++++ ++ e+ + p + ++ +++e++ +l+ + e+ P+ +++++ta qaIl+ v +++r+H iD++i+ G+QW L+ XP_027118103.1 28 KMAKKIGSALQEKITMeTGGEVLQEKPEGNRRDLTVEEAFLSLHPaLMEChakLPFCRITQFTAIQAILDNVGSAKRIHLIDLGIKCGTQWSVLM 122 667777888888888833444444443333333333333333222555542227***************************************** PP GRAS 130 qaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223 qaLa+R e p l+iT+vg+ ske++ee+g++L++fA++l++pf f++ v+++l++++ +++ +E++a+ + l++ +ll+ +++les XP_027118103.1 123 QALANRHECPLeLLKITAVGP----SKEMIEEIGKQLSSFAASLNIPFAFRI-VVSDLQNVDQYLFQLAANEVVAIYSELRMASLLAWPHHLES- 211 *******6665499*******....**************************9.7999*****************************99999999. PP GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318 +L+++k+l+P+v+v++e ea++n++ F++rf +l++ +alfd+le+ + r+s r+ +E ++l++ i+ +++ +g+e+++r+e+ + Wr+ XP_027118103.1 212 ---LLSTIKKLRPRVMVMIEIEANTNAPLFMDRFNASLSVSAALFDCLESCMDRDSPCRAIIEGMFLREGIQYLITSRGKESIHRQESIGFWRAF 303 ...******************************************************************************************** PP GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+++G+ +++ls+ a +qa+l+ + + + ++e + + + +gWk+ p+ ++S+W+ XP_027118103.1 304 LKRFGMVEIALSNWAFCQANLVAKSNPcWSSCTLEVNGKGMAIGWKGTPIHMLSVWK 360 ***************************9999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence |
MPEQSPTSEP SNISCSLSLE LSTVDIIKMA KKIGSALQEK ITMETGGEVL QEKPEGNRRD 60 LTVEEAFLSL HPALMECHAK LPFCRITQFT AIQAILDNVG SAKRIHLIDL GIKCGTQWSV 120 LMQALANRHE CPLELLKITA VGPSKEMIEE IGKQLSSFAA SLNIPFAFRI VVSDLQNVDQ 180 YLFQLAANEV VAIYSELRMA SLLAWPHHLE SLLSTIKKLR PRVMVMIEIE ANTNAPLFMD 240 RFNASLSVSA ALFDCLESCM DRDSPCRAII EGMFLREGIQ YLITSRGKES IHRQESIGFW 300 RAFLKRFGMV EIALSNWAFC QANLVAKSNP CWSSCTLEVN GKGMAIGWKG TPIHMLSVWK 360 C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-47 | GRAS family protein |