PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027118093.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 410aa MW: 46047.8 Da PI: 5.2165

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027118093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.9e-12	203	254	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_027118093.1 203 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 254 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MEKEENYSGS IPGNFTGLDY TLEHHQQNQH PQLMKPQIGE ASGDDGSNQM VDYMLHNTAQ 60 QQPMSSGFCG STSLDKLSFA DVMQFADFGP KLALNQAKTP EEETVLNDSV YFLKFPVLNE 120 KLQDDPDHQA LMIPRPINEE SNSKVGEEGD QRPDQDQARG FGNTSVQLQF LGDNREKSPL 180 TTETKNKKKR SRTIKSSEEV ESQRMTHIAV ERNRRKQMNE HLRVLRSLMP GSYVQRGDQA 240 SIIGGAIEFV RELEQLLQCL ESQKRRRLYG DGPRPIGDSS SSVPIQQPQP PFFPGMPLSS 300 DQMKLVELET GLHEETAESK SCLADVEVKL LGFDALIKIL SRRRPGQLIK TIAALEDLQL 360 NILHTNITTI EQTVLYSFNV KVASEARFTA EDIANSIQQI FSFIHANSSI

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MEKEENYSGS IPGNFTGLDY TLEHHQQNQH PQLMKPQIGE ASGDDGSNQM VDYMLHNTAQ  60
QQPMSSGFCG STSLDKLSFA DVMQFADFGP KLALNQAKTP EEETVLNDSV YFLKFPVLNE  120
KLQDDPDHQA LMIPRPINEE SNSKVGEEGD QRPDQDQARG FGNTSVQLQF LGDNREKSPL  180
TTETKNKKKR SRTIKSSEEV ESQRMTHIAV ERNRRKQMNE HLRVLRSLMP GSYVQRGDQA  240
SIIGGAIEFV RELEQLLQCL ESQKRRRLYG DGPRPIGDSS SSVPIQQPQP PFFPGMPLSS  300
DQMKLVELET GLHEETAESK SCLADVEVKL LGFDALIKIL SRRRPGQLIK TIAALEDLQL  360
NILHTNITTI EQTVLYSFNV KVASEARFTA EDIANSIQQI FSFIHANSSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	215	RMTHIAVERNRR
2	264	268	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-134	bHLH family protein