PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027117759.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 136aa    MW: 15031.4 Da    PI: 8.6265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027117759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-0542741855
                    HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++  L++l+ +      +K + a++L +A+eYI+ Lq
  XP_027117759.1 42 EKITALQQLVSPY-----GKTDTASVLLEAMEYIRFLQ 74
                    6788888888888.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MMMEHKRCPV SLDQSSLASL TPKRHKADIS VLSKEKKEKV GEKITALQQL VSPYGKTDTA  60
SVLLEAMEYI RFLQEQVKVL SAPYLCNTPT TTEQEQEPYS LRSRGLCLVP ISCTVGVASS  120
NGADIWAPIK TASQKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.33e-58bHLH family protein