PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027117133.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 552aa MW: 60337 Da PI: 8.776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027117133.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027117133.1 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	15.5	5.1e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_027117133.1 131 WKCDKCSKKYAVQSDWKAHQKTC 153 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MYIVLALKIK HSGPPERSLE LDWPWFVTLI SFCPVDPTAE VVALSPTTLM ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WKLKQRTTTE VRKRVYICPE PTCVHHNPAR ALGDLTGIKK 120 HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD SFITHRAFCD 180 ALAEENNKVN QGLMNSMGPN MQGQMPDFMS SMPMNPNANT SMGLSEFNNF DPKNPLKSLP 240 QDLVPMPFKP TNMVGGMFSS SSGTLFGSPK GISSSCSGLQ LSSNTPSSFN YLQEGKNGSQ 300 LSGSPHMSAT ALLQKAAQMG ATASNTINSP MMQKSFVGSM AGPDQIAGPK SSAYSSMQQH 360 NINNSNNASY ENFATHQPDQ SGLAGLHNAG GFNPHLLHKG PSQETNHHHH QLFDHSGGAA 420 AAGTSAMNDL GMYSGILLGS DQNLGFIKGM DRRGGGDDSD SPAGLMQSRG SMSRSPAAGP 480 TRMRGGNGSD VTTVDFLGIG VSRPPNVHEQ QQRLDQLEAM SQHRMQVMDP FHQQLSHGHG 540 EPAHVEKPLW DV

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MYIVLALKIK HSGPPERSLE LDWPWFVTLI SFCPVDPTAE VVALSPTTLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLKQRTTTE VRKRVYICPE PTCVHHNPAR ALGDLTGIKK  120
HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD SFITHRAFCD  180
ALAEENNKVN QGLMNSMGPN MQGQMPDFMS SMPMNPNANT SMGLSEFNNF DPKNPLKSLP  240
QDLVPMPFKP TNMVGGMFSS SSGTLFGSPK GISSSCSGLQ LSSNTPSSFN YLQEGKNGSQ  300
LSGSPHMSAT ALLQKAAQMG ATASNTINSP MMQKSFVGSM AGPDQIAGPK SSAYSSMQQH  360
NINNSNNASY ENFATHQPDQ SGLAGLHNAG GFNPHLLHKG PSQETNHHHH QLFDHSGGAA  420
AAGTSAMNDL GMYSGILLGS DQNLGFIKGM DRRGGGDDSD SPAGLMQSRG SMSRSPAAGP  480
TRMRGGNGSD VTTVDFLGIG VSRPPNVHEQ QQRLDQLEAM SQHRMQVMDP FHQQLSHGHG  540
EPAHVEKPLW DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-93	C2H2 family protein