PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027117037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 377aa MW: 40303.6 Da PI: 8.7484 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.7e-11 | 303 | 348 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq XP_027117037.1 303 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 348 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence |
MYPSSTSSSS QGSLGPNGGS NTGGLIRYGS APSSLLATTV DSVTNPSSRE LSALGSSHNL 60 HIGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI 120 GGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNGF PIARTHDISR 180 LNSQLSFTHQ ETLSQISEET ENVDNGLNAE NEKRKSAHTY SNVSYGVGPW EDANTIMFSM 240 GPTSKRAKNM SGDIVNLNSM ETQFSMPQTM LDMSSMDKLL NIPQDSVPCK IRAKRGCATH 300 PRSIAERERR TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKGLQNQ VQRLHKELEN 360 CTCGCRKPQD SCRGGKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-67 | bHLH family protein |