PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027117036.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 379aa    MW: 40578.9 Da    PI: 8.7484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027117036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11305350655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  XP_027117036.1 305 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 350
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MYPSSTSSSS QGSLGPNGGS NTGGLIRYGS APSSLLATTV DSVTNPSSRE LSALGSSHNL  60
HIGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI  120
GGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNGF PIARTHDISR  180
LNSQLSFTHQ ETLSQISEET ENVDNGLNAE NEKRKSAHTY SNVSYGVGPW EDANTIMFSM  240
GPTSKRAKNM SGDIVNLNSM ETQFQFSMPQ TMLDMSSMDK LLNIPQDSVP CKIRAKRGCA  300
THPRSIAERE RRTRISGKLK KLQDLVPNMD KQTSYADMLD LAVQHIKGLQ NQVQRLHKEL  360
ENCTCGCRKP QDSCRGGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-67bHLH family protein