PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027116923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46363.4 Da PI: 8.5806 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.7 | 8.4e-13 | 76 | 100 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027116923.1 76 EPDCQYYLRTGTCKFGASCKFHHPR 100 789********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 122 | 146 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027116923.1 122 EKECSYYLKTGQCKFGNTCKFHHPQ 146 689********************97 PP | |||||||
3 | zf-CCCH | 37.7 | 3.3e-12 | 271 | 297 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++C+F+H+p XP_027116923.1 271 PGQPECQYYMRYGDCKFGPSCRFHHPP 297 5789*********************97 PP | |||||||
4 | zf-CCCH | 26.4 | 1.2e-08 | 319 | 343 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ XP_027116923.1 319 MQSCPFYLQKGHCKFGRNCKFDHPM 343 567********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence |
MELYGRSNAR KGLQQNRSRE WAPAAREAES TGRLGLWDGE AYPERPGMLE CAYYMRTGVG 60 GSVSLAAADY PERVGEPDCQ YYLRTGTCKF GASCKFHHPR NAGGSLISVS LNIYGYPLRL 120 GEKECSYYLK TGQCKFGNTC KFHHPQPAGM SMPATAHPFY PTVQSPSALS EQYCCASTNY 180 RVSRPPILTG SYVPGAYGPF LLHTGVVPVP NWGPYTGPIT PGFSPGTQAS VGATSLYGVS 240 QLNSSATAFA GTYPTLLSDS NQKKQKFPER PGQPECQYYM RYGDCKFGPS CRFHHPPNLV 300 VAKAYSALSP LGLPLRPGMQ SCPFYLQKGH CKFGRNCKFD HPMGTVEYSP SASSLTDVPV 360 TPYMLCSSTA MEGQAAEFVG SKLDLQITRD RPHGSSLSGS VGLTFSRTAP FLLSNIQISD 420 QGSGPNAD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-152 | C3H family protein |