PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027116915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 431aa MW: 46634.7 Da PI: 8.5806 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.6 | 8.4e-13 | 79 | 103 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027116915.1 79 EPDCQYYLRTGTCKFGASCKFHHPR 103 789********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 125 | 149 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027116915.1 125 EKECSYYLKTGQCKFGNTCKFHHPQ 149 689********************97 PP | |||||||
3 | zf-CCCH | 37.7 | 3.4e-12 | 274 | 300 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++C+F+H+p XP_027116915.1 274 PGQPECQYYMRYGDCKFGPSCRFHHPP 300 5789*********************97 PP | |||||||
4 | zf-CCCH | 26.4 | 1.2e-08 | 322 | 346 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ XP_027116915.1 322 MQSCPFYLQKGHCKFGRNCKFDHPM 346 567********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence |
MELYGRSNAR KGLQQNRSRE WAPAAREAGL TESTGRLGLW DGEAYPERPG MLECAYYMRT 60 GVGGSVSLAA ADYPERVGEP DCQYYLRTGT CKFGASCKFH HPRNAGGSLI SVSLNIYGYP 120 LRLGEKECSY YLKTGQCKFG NTCKFHHPQP AGMSMPATAH PFYPTVQSPS ALSEQYCCAS 180 TNYRVSRPPI LTGSYVPGAY GPFLLHTGVV PVPNWGPYTG PITPGFSPGT QASVGATSLY 240 GVSQLNSSAT AFAGTYPTLL SDSNQKKQKF PERPGQPECQ YYMRYGDCKF GPSCRFHHPP 300 NLVVAKAYSA LSPLGLPLRP GMQSCPFYLQ KGHCKFGRNC KFDHPMGTVE YSPSASSLTD 360 VPVTPYMLCS STAMEGQAAE FVGSKLDLQI TRDRPHGSSL SGSVGLTFSR TAPFLLSNIQ 420 ISDQGSGPNA D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-155 | C3H family protein |