PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 431aa    MW: 46634.7 Da    PI: 8.5806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.4e-1379103327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtGtCk+G++CkF+H++
  XP_027116915.1  79 EPDCQYYLRTGTCKFGASCKFHHPR 103
                     789********************96 PP

2zf-CCCH38.32.3e-12125149327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG+Ck+G++CkF+H++
  XP_027116915.1 125 EKECSYYLKTGQCKFGNTCKFHHPQ 149
                     689********************97 PP

3zf-CCCH37.73.4e-12274300127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++r+G Ck+G++C+F+H+p
  XP_027116915.1 274 PGQPECQYYMRYGDCKFGPSCRFHHPP 300
                     5789*********************97 PP

4zf-CCCH26.41.2e-08322346327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f+++ G+Ck+G +CkF H++
  XP_027116915.1 322 MQSCPFYLQKGHCKFGRNCKFDHPM 346
                     567********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MELYGRSNAR KGLQQNRSRE WAPAAREAGL TESTGRLGLW DGEAYPERPG MLECAYYMRT  60
GVGGSVSLAA ADYPERVGEP DCQYYLRTGT CKFGASCKFH HPRNAGGSLI SVSLNIYGYP  120
LRLGEKECSY YLKTGQCKFG NTCKFHHPQP AGMSMPATAH PFYPTVQSPS ALSEQYCCAS  180
TNYRVSRPPI LTGSYVPGAY GPFLLHTGVV PVPNWGPYTG PITPGFSPGT QASVGATSLY  240
GVSQLNSSAT AFAGTYPTLL SDSNQKKQKF PERPGQPECQ YYMRYGDCKF GPSCRFHHPP  300
NLVVAKAYSA LSPLGLPLRP GMQSCPFYLQ KGHCKFGRNC KFDHPMGTVE YSPSASSLTD  360
VPVTPYMLCS STAMEGQAAE FVGSKLDLQI TRDRPHGSSL SGSVGLTFSR TAPFLLSNIQ  420
ISDQGSGPNA D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-155C3H family protein