PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027116912.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 48398.7 Da PI: 8.7204 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 49 | 72 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG C yG++C+++H++ XP_027116912.1 49 LECAYYMRTGVCGYGAKCRYNHPR 72 58********************96 PP | |||||||
2 | zf-CCCH | 39.6 | 8.8e-13 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027116912.1 94 EPDCQYYLRTGTCKFGASCKFHHPR 118 789********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027116912.1 140 EKECSYYLKTGQCKFGNTCKFHHPQ 164 689********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.5e-12 | 289 | 315 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++C+F+H+p XP_027116912.1 289 PGQPECQYYMRYGDCKFGPSCRFHHPP 315 5789*********************97 PP | |||||||
5 | zf-CCCH | 26.3 | 1.3e-08 | 337 | 361 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ XP_027116912.1 337 MQSCPFYLQKGHCKFGRNCKFDHPM 361 567********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence |
MELYGRSNAR KGLQQNRSRE WAPAAREAES TGRLGLWDGE AYPERPGMLE CAYYMRTGVC 60 GYGAKCRYNH PRDRASVGGS VSLAAADYPE RVGEPDCQYY LRTGTCKFGA SCKFHHPRNA 120 GGSLISVSLN IYGYPLRLGE KECSYYLKTG QCKFGNTCKF HHPQPAGMSM PATAHPFYPT 180 VQSPSALSEQ YCCASTNYRV SRPPILTGSY VPGAYGPFLL HTGVVPVPNW GPYTGPITPG 240 FSPGTQASVG ATSLYGVSQL NSSATAFAGT YPTLLSDSNQ KKQKFPERPG QPECQYYMRY 300 GDCKFGPSCR FHHPPNLVVA KAYSALSPLG LPLRPGMQSC PFYLQKGHCK FGRNCKFDHP 360 MGTVEYSPSA SSLTDVPVTP YMLCSSTAME GQAAEFVGSK LDLQITRDRP HGSSLSGSVG 420 LTFSRTAPFL LSNIQISDQG SGPNAD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-164 | C3H family protein |