PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116912.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 446aa    MW: 48398.7 Da    PI: 8.7204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-104972427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                     +C +++rtG C yG++C+++H++
  XP_027116912.1 49 LECAYYMRTGVCGYGAKCRYNHPR 72
                    58********************96 PP

2zf-CCCH39.68.8e-1394118327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtGtCk+G++CkF+H++
  XP_027116912.1  94 EPDCQYYLRTGTCKFGASCKFHHPR 118
                     789********************96 PP

3zf-CCCH38.22.4e-12140164327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG+Ck+G++CkF+H++
  XP_027116912.1 140 EKECSYYLKTGQCKFGNTCKFHHPQ 164
                     689********************97 PP

4zf-CCCH37.73.5e-12289315127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++r+G Ck+G++C+F+H+p
  XP_027116912.1 289 PGQPECQYYMRYGDCKFGPSCRFHHPP 315
                     5789*********************97 PP

5zf-CCCH26.31.3e-08337361327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f+++ G+Ck+G +CkF H++
  XP_027116912.1 337 MQSCPFYLQKGHCKFGRNCKFDHPM 361
                     567********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MELYGRSNAR KGLQQNRSRE WAPAAREAES TGRLGLWDGE AYPERPGMLE CAYYMRTGVC  60
GYGAKCRYNH PRDRASVGGS VSLAAADYPE RVGEPDCQYY LRTGTCKFGA SCKFHHPRNA  120
GGSLISVSLN IYGYPLRLGE KECSYYLKTG QCKFGNTCKF HHPQPAGMSM PATAHPFYPT  180
VQSPSALSEQ YCCASTNYRV SRPPILTGSY VPGAYGPFLL HTGVVPVPNW GPYTGPITPG  240
FSPGTQASVG ATSLYGVSQL NSSATAFAGT YPTLLSDSNQ KKQKFPERPG QPECQYYMRY  300
GDCKFGPSCR FHHPPNLVVA KAYSALSPLG LPLRPGMQSC PFYLQKGHCK FGRNCKFDHP  360
MGTVEYSPSA SSLTDVPVTP YMLCSSTAME GQAAEFVGSK LDLQITRDRP HGSSLSGSVG  420
LTFSRTAPFL LSNIQISDQG SGPNAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-164C3H family protein