PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116904.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 449aa MW: 48670 Da PI: 8.7204

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	52	75	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG C yG++C+++H++ XP_027116904.1 52 LECAYYMRTGVCGYGAKCRYNHPR 75 58********************96 PP
2	zf-CCCH	39.6	8.9e-13	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027116904.1 97 EPDCQYYLRTGTCKFGASCKFHHPR 121 789********************96 PP
3	zf-CCCH	38.2	2.4e-12	143	167	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027116904.1 143 EKECSYYLKTGQCKFGNTCKFHHPQ 167 689********************97 PP
4	zf-CCCH	37.7	3.5e-12	292	318	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++C+F+H+p XP_027116904.1 292 PGQPECQYYMRYGDCKFGPSCRFHHPP 318 5789*********************97 PP
5	zf-CCCH	26.3	1.3e-08	340	364	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ XP_027116904.1 340 MQSCPFYLQKGHCKFGRNCKFDHPM 364 567********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MELYGRSNAR KGLQQNRSRE WAPAAREAGL TESTGRLGLW DGEAYPERPG MLECAYYMRT 60 GVCGYGAKCR YNHPRDRASV GGSVSLAAAD YPERVGEPDC QYYLRTGTCK FGASCKFHHP 120 RNAGGSLISV SLNIYGYPLR LGEKECSYYL KTGQCKFGNT CKFHHPQPAG MSMPATAHPF 180 YPTVQSPSAL SEQYCCASTN YRVSRPPILT GSYVPGAYGP FLLHTGVVPV PNWGPYTGPI 240 TPGFSPGTQA SVGATSLYGV SQLNSSATAF AGTYPTLLSD SNQKKQKFPE RPGQPECQYY 300 MRYGDCKFGP SCRFHHPPNL VVAKAYSALS PLGLPLRPGM QSCPFYLQKG HCKFGRNCKF 360 DHPMGTVEYS PSASSLTDVP VTPYMLCSST AMEGQAAEFV GSKLDLQITR DRPHGSSLSG 420 SVGLTFSRTA PFLLSNIQIS DQGSGPNAD

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MELYGRSNAR KGLQQNRSRE WAPAAREAGL TESTGRLGLW DGEAYPERPG MLECAYYMRT  60
GVCGYGAKCR YNHPRDRASV GGSVSLAAAD YPERVGEPDC QYYLRTGTCK FGASCKFHHP  120
RNAGGSLISV SLNIYGYPLR LGEKECSYYL KTGQCKFGNT CKFHHPQPAG MSMPATAHPF  180
YPTVQSPSAL SEQYCCASTN YRVSRPPILT GSYVPGAYGP FLLHTGVVPV PNWGPYTGPI  240
TPGFSPGTQA SVGATSLYGV SQLNSSATAF AGTYPTLLSD SNQKKQKFPE RPGQPECQYY  300
MRYGDCKFGP SCRFHHPPNL VVAKAYSALS PLGLPLRPGM QSCPFYLQKG HCKFGRNCKF  360
DHPMGTVEYS PSASSLTDVP VTPYMLCSST AMEGQAAEFV GSKLDLQITR DRPHGSSLSG  420
SVGLTFSRTA PFLLSNIQIS DQGSGPNAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-168	C3H family protein